YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349136, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	574 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349136, gi|....

Description	E-value	Query Range	Subject Range
gi\|78509943, gi\|... - gi\|78690619\|ref\|ZP_00855261.1\| Anthranilate synthase component I, TrpE [Shewanella sp. MR-7], gi\|785...	602.0	[0..1]	[565..1]
gi\|82405450, gi\|... - gi\|82496495\|ref\|ZP_00882062.1\| Anthranilate synthase component I, TrpE [Shewanella sp. MR-4], gi\|824...	596.0	[0..1]	[553..1]
gi\|78505345, gi\|... - gi\|78686947\|ref\|ZP_00851707.1\| Anthranilate synthase component I, TrpE [Shewanella sp. ANA-3], gi\|78...	583.0	[0..1]	[555..1]
gi\|36785786, gi\|... - gi\|37526355\|ref\|NP_929699.1\| anthranilate synthase component I [Photorhabdus luminescens subsp. laum...	574.0	[0..26]	[556..7]
gi\|187732406, gi... - gi\|75179091\|ref\|ZP_00699109.1\| COG0147: Anthranilate/para-aminobenzoate synthases component I [Shige...	574.0	[0..27]	[556..8]
gi\|194415968, gi... - gi\|75212703\|ref\|ZP_00712701.1\| COG0147: Anthranilate/para-aminobenzoate synthases component I [Esche... gi\|195182853 - gi\|195182853\|dbj\|BAG66425.1\| component I of anthranilate synthase [Escherichia coli O111:H-] gi\|193062685, gi... - gi\|75259376\|ref\|ZP_00730695.1\| COG0147: Anthranilate/para-aminobenzoate synthases component I [Esche...	574.0	[0..27]	[556..8]
gi\|75230178, gi\|... - gi\|75230178\|ref\|ZP_00716679.1\| COG0147: Anthranilate/para-aminobenzoate synthases component I [Esche... gi\|209918504, gi... - gi\|209918504\|ref\|YP_002292588.1\| anthranilate synthase component I [Escherichia coli SE11], gi\|20991... gi\|218360584, gi... - gi\|218553816\|ref\|YP_002386729.1\| anthranilate synthase component I [Escherichia coli IAI1], gi\|21836...	573.0	[0..27]	[556..8]
gi\|75190350, gi\|... - gi\|75190350\|ref\|ZP_00703617.1\| COG0147: Anthranilate/para-aminobenzoate synthases component I [Esche...	573.0	[0..27]	[556..8]
gi\|77809690, gi\|... - gi\|77815310\|ref\|ZP_00814546.1\| Anthranilate synthase component I, TrpE [Shewanella putrefaciens CN-3...	573.0	[0..21]	[554..3]
gi\|120598422, gi... - gi\|82741490\|ref\|ZP_00904210.1\| Anthranilate synthase component I, TrpE [Shewanella sp. W3-18-1], gi\|...	572.0	[0..21]	[554..5]

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Predicted Domain #1

Region A:
Residues: [1-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKTFNQVT QADRANLASS QQTFARSHTL KATLVYHSDP LRLYQHITED APHTMLLESA  60
   61 EINSKENLKS MVMTHAALMI RCDGYRLRFS ALTDNGASLL TPIEQFFMAR SCHTQCQRNG 120
  121 QHLVVTLQKD TELKDEDARL KSTSPLDGLR LFVKHIDCGA HTDSQSKPAF EDLFLGGVLS 180
  181 YDLIDTVEPL PEAPNGANDC PDYLFYLAET LILIDHKQKQ AEIITHNFSE SAEQHSEVTQ 240
  241 ALAERVENIR AQCEALAKSA TPAPALVGIT ATEQVNVSDE AFKQTVIDLK EHIIAGDIFQ 300
  301 VVPSRSFSLP CPNTLGAYRA LRLTNPSPYM FYFRGNDFTL FGASPESALK FDSSNNQVEV 360
  361 YPIAGTRKRG KTASGEIDFD LDSRIELELR LDKKELSEHL MLVDLARNDI ARISQSGSRK 420
  421 VAELLKVDRY SHVMHLVSRV TGQLRQDLDA LHAYQACMNM GTLVGAPKVR ASQLVRQAEK 480
  481 TRRGSYGGAV GYLNALGDMD TCIVIRSAFV KDGVAHIQAG AGVVFDSDPQ SEADETRQKA 540
  541 QAVISAIKMG AGLAGINNCN EHTSTKVSTA AQQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	161.0
Match:	1i1qA
Description:	Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-amino-4-deoxychorismate synthase activity	9.91522831720207	bayes_pls_golite062009
anthranilate synthase activity	4.92868276279679	bayes_pls_golite062009
oxo-acid-lyase activity	3.76913113068346	bayes_pls_golite062009
carbon-carbon lyase activity	2.42362294309332	bayes_pls_golite062009
catalytic activity	2.11110806828104	bayes_pls_golite062009
lyase activity	0.454734323696838	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: