YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374652, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374652, gi|....

Description	E-value	Query Range	Subject Range
gi\|37679281, gi\|... - gi\|37679281\|ref\|NP_933890.1\| TRAP-type C4-dicarboxylate transport system, small permease component [...	163.0	[0..2]	[204..14]
gi\|27359634, gi\|... - gi\|27363518\|ref\|NP_759046.1\| TRAP-type C4-dicarboxylate transport system, small permease component [...	162.0	[0..2]	[204..14]
gi\|91188385, gi\|... - gi\|91227738\|ref\|ZP_01261965.1\| putative C4-dicarboxylate transport protein DctQ [Vibrio alginolyticu...	156.0	[0..4]	[217..11]
gi\|117612195, gi... - gi\|78687145\|ref\|ZP_00851901.1\| C4-dicarboxylate transporter, putative [Shewanella sp. ANA-3], gi\|785...	153.0	[0..1]	[205..1]
gi\|84387729, gi\|... - gi\|84387729\|ref\|ZP_00990745.1\| putative C4-dicarboxylate transport protein DctQ [Vibrio splendidus 1...	152.0	[0..4]	[196..26]
gi\|82495315, gi\|... - gi\|82495315\|ref\|ZP_00880892.1\| C4-dicarboxylate transporter, putative [Shewanella sp. MR-4], gi\|8240...	152.0	[0..1]	[205..1]
gi\|113888375, gi... - gi\|114046933\|ref\|YP_737483.1\| tripartite ATP-independent periplasmic transporter DctQ [Shewanella sp...	152.0	[0..1]	[205..1]
gi\|86147631, gi\|... - gi\|86147631\|ref\|ZP_01065940.1\| putative C4-dicarboxylate transport protein DctQ [Vibrio sp. MED222],...	152.0	[0..4]	[196..26]
gi\|69165347, gi\|... - gi\|69950906\|ref\|ZP_00638698.1\| Tripartite ATP-independent periplasmic transporter, DctQ component [S...	150.0	[0..2]	[201..18]
gi\|75827249 - gi\|75827249\|ref\|ZP_00756684.1\| COG3090: TRAP-type C4-dicarboxylate transport system, small permease ... gi\|75814912 - gi\|75814912\|ref\|ZP_00745453.1\| COG3090: TRAP-type C4-dicarboxylate transport system, small permease ...	149.0	[0..4]	[209..11]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIARIFGYFE EGVLNLLITL MTLLVFTEVV ARFFFDTGFL WIQELTLTLC GWFVLFGMSY  60
   61 GVKVGAHIGV DALVKKLPPN AKKITSLITT LICLTYCILF LKGSWSYLSQ MYQIGVPMED 120
  121 IHFPAWLLAR LDPDWAWNVL KIDIEDGAVP IWISQSILLI GFSMLTWRFI ELFVAILRNQ 180
  181 VTGLSFADEA KESMHLIDDT AIQSQGPQHT TGAAHKELP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.004365
Match:	PF04290.3
Description:	No description for PF04290.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits