YRC Public Data Repository - Protein Structure Prediction

Protein:	KITH_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KITH_SHEON.

Description	E-value	Query Range	Subject Range
gi\|91715889, gi\|... - gi\|91793887\|ref\|YP_563538.1\| thymidine kinase [Shewanella denitrificans OS217], gi\|91715889\|gb\|ABE55...	295.0	[0..1]	[192..1]
gi\|69165372, gi\|... - gi\|69950931\|ref\|ZP_00638723.1\| Thymidine kinase [Shewanella frigidimarina NCIMB 400], gi\|69165372\|gb...	293.0	[0..1]	[192..1]
gi\|113460556, gi... - gi\|23466490\|ref\|ZP_00122078.1\| COG1435: Thymidine kinase [Haemophilus somnus 129PT], gi\|113460556\|re...	293.0	[0..1]	[191..1]
gi\|117919858, gi... - gi\|78687140\|ref\|ZP_00851896.1\| Thymidine kinase [Shewanella sp. ANA-3], gi\|78505140\|gb\|EAP18677.1\| T...	292.0	[0..1]	[192..1]
gi\|78691515, gi\|... - gi\|78691515\|ref\|ZP_00856127.1\| Thymidine kinase [Shewanella sp. MR-7], gi\|78509083\|gb\|EAP22493.1\| Th... gi\|113969699, gi... - gi\|82495310\|ref\|ZP_00880887.1\| Thymidine kinase [Shewanella sp. MR-4], gi\|82406813\|gb\|EAP47476.1\| Th...	292.0	[0..1]	[192..1]
gi\|113906764, gi... - gi\|160876099\|ref\|YP_001555415.1\| thymidine kinase [Shewanella baltica OS195], gi\|160861621\|gb\|ABX501... gi\|126175047, gi... - gi\|68540665\|ref\|ZP_00580415.1\| Thymidine kinase [Shewanella baltica OS155], gi\|68521548\|gb\|EAN45040....	292.0	[0..1]	[192..1]
gi\|77377647 - gi\|77377647\|gb\|ABA70559.1\| thymidine kinase [Yersinia enterocolitica]	291.0	[0..1]	[190..1]
gi\|238718765, gi... - gi\|77960742\|ref\|ZP_00824600.1\| COG1435: Thymidine kinase [Yersinia mollaretii ATCC 43969], gi\|238797...	291.0	[0..1]	[190..1]
gi\|82742452, gi\|... - gi\|82742452\|ref\|ZP_00905144.1\| Thymidine kinase [Shewanella sp. W3-18-1], gi\|82720173\|gb\|EAP55047.1\|... gi\|77808597, gi\|... - gi\|77816449\|ref\|ZP_00815636.1\| Thymidine kinase [Shewanella putrefaciens CN-32], gi\|77808597\|gb\|EAO9... gi\|124508489, gi... - gi\|124548429\|ref\|ZP_01707105.1\| thymidine kinase [Shewanella putrefaciens 200], gi\|124508489\|gb\|EAY5...	289.0	[0..1]	[192..1]
gi\|1246361 - gi\|1246361\|gb\|AAA93511.1\| thymidine:thymidylate kinase:zeocin resistance fusion protein [Cloning vec...	288.0	[0..1]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLYFYYSA MNAGKSTSLL QSSYNYRERG MNTLVMTASI DDRYGKGKVA SRIGIESDAQ  60
   61 VFSSHDNLIE MITAAHQENH LSCVLVDECQ FLSKEQVKQL TYIVDKIDIP VLCYGLRTDF 120
  121 QGELFSGSHY LLAWADKLVE LKTICHCGRK ANMVVRLDGE GKVMREGEQV AIGGNESYES 180
  181 VCRKHFREFI WD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	2ja1A
Description:	No description for 2ja1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits