YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349338, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349338, gi|....

Description	E-value	Query Range	Subject Range
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	278.0	[0..1]	[371..1]
gi\|45047722, gi\|... - gi\|45358856\|ref\|NP_988413.1\| glycosyl transferase, group 1 [Methanococcus maripaludis S2], gi\|450477...	268.0	[0..1]	[371..1]
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	268.0	[0..1]	[372..1]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	268.0	[0..1]	[372..4]
gi\|147920342, gi... - gi\|147920342\|ref\|YP_685885.1\| glycosyltransferase (group 1) [uncultured methanogenic archaeon RC-I],...	266.0	[0..1]	[373..1]
gi\|57159582, gi\|... - gi\|57641258\|ref\|YP_183736.1\| glycosyl transferase family protein [Thermococcus kodakarensis KOD1], g...	263.0	[0..1]	[372..1]
gi\|20806796 - gi\|20806796\|ref\|NP_621967.1\| predicted glycosyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20806796, gi\|... - gi\|20806796\|ref\|NP_621967.1\| glycosyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515259...	261.0	[0..1]	[372..17]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	260.0	[0..1]	[372..1]
gi\|220932435, gi... - gi\|89210731\|ref\|ZP_01189117.1\| Glycosyl transferase, group 1 [Halothermothrix orenii H 168], gi\|8915...	260.0	[0..1]	[372..1]
gi\|7433883 - pir\|\|F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Pyrococcus horikoshii gi\|3258282, gi\|1... - gi\|3258282\|dbj\|BAA30965.1\| 381aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591592\|...	258.0	[0..1]	[372..4]

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Predicted Domain #1

Region A:
Residues: [1-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIIHVIVGL PASGAELFLQ RLSFEQRNAN YHITVISLTT EGTLGEALRS RGVNVLFLGL  60
   61 SGVLSVPLVV YKLRKHISNI RPDIIQSWMY HADFFSSLAM FGLNKKLIWS VRCSNIPAGS 120
  121 YFTLALMKIC SLLSYVSPAR VCYVAEASKV FHQSQGYSPK KSITIANGYD FSSLVYSEKK 180
  181 RNSFRESLSL DKHVTVFGLV GRFHKDKGQD ILLEAFSKLK ADISNYKILL VGRECNNDNH 240
  241 QLVNLINSYG LDENVILLGE QNDISGLLSA MDIYVMGSRT EGFPNALAEA MSIGLPCIAT 300
  301 NVGDAALLAD KYAVLSEANS NSLADAILAV VKMPVEQRKM LGIHAADHVR KSFSIVEIKK 360
  361 LYDQLYHSLL EKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	2bisA
Description:	Structure of glycogen synthase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring hexosyl groups	3.04530122157712	bayes_pls_golite062009
catalytic activity	3.02192459767177	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.94500176353224	bayes_pls_golite062009
glycogen phosphorylase activity	2.09116455393465	bayes_pls_golite062009
lipopolysaccharide heptosyltransferase activity	2.03374890992046	bayes_pls_golite062009
glucosyltransferase activity	1.8062586862583	bayes_pls_golite062009
transferase activity	1.67770954408305	bayes_pls_golite062009
UDP-N-acetylglucosamine 2-epimerase activity	1.63103907245982	bayes_pls_golite062009
UDP-glucosyltransferase activity	1.4199532885636	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.30934991061674	bayes_pls_golite062009
glycogen (starch) synthase activity	0.435616523537281	bayes_pls_golite062009
phosphorylase activity	0.431662083250969	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.27693350081385	bayes_pls_golite062009
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	0.22009679964126	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: