YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374850, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374850, gi|....

Description	E-value	Query Range	Subject Range
gi\|39982231, gi\|... - gi\|39995468\|ref\|NP_951419.1\| OmpA domain-containing protein [Geobacter sulfurreducens PCA], gi\|39982...	172.0	[0..23]	[193..246]
gi\|107101208 - gi\|107101208\|ref\|ZP_01365126.1\| hypothetical protein PaerPA_01002240 [Pseudomonas aeruginosa PACS2] gi\|94414606 - gi\|94414606\|ref\|ZP_01294465.1\| hypothetical protein PaerP_01003681 [Pseudomonas aeruginosa PA7] gi\|84328098 - gi\|84328098\|ref\|ZP_00976109.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ... gi\|84321510 - gi\|84321510\|ref\|ZP_00969867.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ... gi\|32041851 - gi\|32041851\|ref\|ZP_00139434.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ...	170.0	[0..16]	[193..170]
gi\|151407, gi\|95008 - pir\|\|A39139 outer membrane protein OprF precursor - Pseudomonas syringae, gi\|151407\|gb\|AAA25910.1\| ... PORF_PSESY - Outer membrane porin F OS=Pseudomonas syringae pv. syringae GN=oprF PE=3 SV=1	170.0	[0..18]	[193..185]
gi\|66045337, gi\|... - gi\|66045337\|ref\|YP_235178.1\| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas ...	170.0	[0..18]	[193..185]
gi\|71557267, gi\|... - gi\|71736714\|ref\|YP_274287.1\| OprF [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71557267\|gb\|AAZ3...	170.0	[0..18]	[193..185]
PORF_PSEAE - Outer membrane porin F OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1222... PORF_PSEAE - Outer membrane porin F OS=Pseudomonas aeruginosa GN=oprF PE=1 SV=1 gi\|115584947, gi... - gi\|116049726\|ref\|YP_791468.1\| major porin and structural outer membrane porin OprF precursor [Pseudo... gi\|152985208, gi... - gi\|152985208\|ref\|YP_001348883.1\| outer membrane protein OprF precursor [Pseudomonas aeruginosa PA7],... gi\|218772497, gi... - gi\|218892271\|ref\|YP_002441138.1\| Major porin and structural outer membrane porin OprF precursor [Pse... gi\|126193497, gi... - gi\|254240119\|ref\|ZP_04933441.1\| Major porin and structural outer membrane porin OprF precursor [Pseu... gi\|254234871, gi... - gi\|254234871\|ref\|ZP_04928194.1\| Major porin and structural outer membrane porin OprF precursor [Pseu...	169.0	[0..16]	[193..189]
gi\|4580975 - gi\|4580975\|gb\|AAD24562.1\|AF117970_1 OprF [Pseudomonas viridiflava]	169.0	[0..18]	[193..185]
gi\|26988814, gi\|... - gi\|26988814\|ref\|NP_744239.1\| OmpF family protein [Pseudomonas putida KT2440], gi\|24983615\|gb\|AAN6770... tr\|E4RAB4\|E4RAB4... - OprF OS=Pseudomonas putida (strain BIRD-1) GN=oprF PE=3 SV=1 gi\|82737946, gi\|... - gi\|82737946\|ref\|ZP_00900788.1\| outer membrane protein OprF [Pseudomonas putida F1], gi\|82714951\|gb\|E... tr\|I7BY62\|I7BY62... - OmpF family protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3250 PE=3 SV=1	169.0	[0..27]	[193..194]
tr\|Q883Q1\|Q883Q1... - Outer membrane porin OprF OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=oprF PE=3 SV=1 gi\|28869499, gi\|... - gi\|28869499\|ref\|NP_792118.1\| outer membrane porin OprF [Pseudomonas syringae pv. tomato str. DC3000]... gi\|213927066, gi... - gi\|213968086\|ref\|ZP_03396231.1\| outer membrane porin OprF [Pseudomonas syringae pv. tomato T1], gi\|2...	168.0	[0..18]	[193..185]
gi\|104780902, gi... - gi\|95109889\|emb\|CAK14594.1\| outer membrane protein OprF [Pseudomonas entomophila L48], gi\|104780902\|... gi\|95109889 - gi\|95109889\|emb\|CAK14594.1\| outer membrane protein OprF [Pseudomonas entomophila L48]	168.0	[0..26]	[193..195]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISVKQWIE LTCLALSLSL MLPAYAWQDT DQDGVPDIKD ACPNTPANTS VMANGCVDEV  60
   61 EVTSDN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1ux6A
Description:	Structure of a thrombospondin C-terminal fragment reveals a novel calcium core in the type 3 repeats
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [67-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQCNLNDPST YSASDCHHIE TAIVYFEFAI AEVDLSQWKA LALVKSFLEA NTETKLTLVG  60
   61 HTDIVGTPEF NYQLSLQRAQ NVKRILVEDY GFNPNRFTVV GKGISEPVAD NRSSEGRGLN 120
  121 RRVQFIVNNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits