YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375292, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375292, gi|....

Description	E-value	Query Range	Subject Range
gi\|33577088, gi\|... - gi\|33602646\|ref\|NP_890206.1\| transcription regulator AsnC [Bordetella bronchiseptica RB50], gi\|33577...	161.0	[0..2]	[153..22]
gi\|33571902, gi\|... - gi\|33592257\|ref\|NP_879901.1\| transcription regulator AsnC [Bordetella pertussis Tohama I], gi\|335719...	161.0	[0..2]	[153..1]
gi\|34102276, gi\|... - gi\|34496423\|ref\|NP_900638.1\| AsnC family transcriptional regulator [Chromobacterium violaceum ATCC 1...	160.0	[0..2]	[153..1]
gi\|83746409, gi\|... - gi\|83746409\|ref\|ZP_00943461.1\| Transcriptional regulator, AsnC family [Ralstonia solanacearum UW551]... gi\|206596047, gi... - gi\|207744640\|ref\|YP_002261032.1\| hypothetical protein RSIPO_02851 [Ralstonia solanacearum IPO1609], ... gi\|206587985, gi... - gi\|207722801\|ref\|YP_002253236.1\| hypothetical protein RSMK05446 [Ralstonia solanacearum MolK2], gi\|2...	160.0	[0..2]	[153..1]
gi\|17430126 - gi\|17430126\|emb\|CAD16811.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17547821 - gi\|17547821\|ref\|NP_521223.1\| transcription regulator protein [Ralstonia solanacearum GMI1000]	159.0	[0..2]	[153..1]
gi\|33574172 - gi\|33574172\|emb\|CAE38504.1\| AsnC-family transcriptional regulator [Bordetella parapertussis] gi\|33597744 - gi\|33597744\|ref\|NP_885387.1\| transcription regulator AsnC [Bordetella parapertussis 12822]	159.0	[0..2]	[153..5]
gi\|78692998, gi\|... - gi\|78692998\|ref\|ZP_00857512.1\| regulatory proteins, AsnC/Lrp [Bradyrhizobium sp. BTAi1], gi\|78518553...	159.0	[0..1]	[153..37]
gi\|76583520, gi\|... - gi\|76819047\|ref\|YP_335941.1\| bkd operon transcriptional regulator [Burkholderia pseudomallei 1710b],...	159.0	[0..2]	[153..57]
gi\|89359103, gi\|... - gi\|89359103\|ref\|ZP_01196924.1\| regulatory proteins, AsnC/Lrp [Xanthobacter autotrophicus Py2], gi\|89...	158.0	[0..5]	[153..1]
gi\|83716630, gi\|... - gi\|83716630\|ref\|YP_438870.1\| bkd operon transcriptional regulator [Burkholderia thailandensis E264],...	158.0	[0..2]	[153..57]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METAFQRDQL DNHILEALMQ DARTPFAELA KRFGVSAGTI HVRVEKMKQA GIITGAQITI  60
   61 NPKALGYDVC CFIGINLKSA GDYPAAIAKL NALEEVVEAY YTTGNYSIFV KVMCQSIDGL 120
  121 QHVLINRIQS IDEIQSTETL ISLQNPITRA VKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	2cg4A
Description:	No description for 2cg4A was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	0.886217880853598	bayes_pls_golite062009
nucleic acid binding	0.5971332115881	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
binding	0.485512984645439	bayes_pls_golite062009
DNA binding	0.444982905809216	bayes_pls_golite062009
catalytic activity	0.292554612322424	bayes_pls_golite062009
transcription factor activity	0.0441133585508817	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: