YRC Public Data Repository - Protein Structure Prediction

Protein:	Y3888_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3888_SHEON.

Description	E-value	Query Range	Subject Range
gi\|82703287, gi\|... - gi\|82703287\|ref\|YP_412853.1\| hypothetical protein Nmul_A2168 [Nitrosospira multiformis ATCC 25196], ...	157.0	[0..1]	[110..1]
gi\|91072942, gi\|... - gi\|91211368\|ref\|YP_541354.1\| hypothetical protein UTI89_C2355 [Escherichia coli UTI89], gi\|91072942\|... gi\|237704537, gi... - gi\|237704537\|ref\|ZP_04535018.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117624276, gi... - gi\|117624276\|ref\|YP_853189.1\| hypothetical protein APECO1_1170 [Escherichia coli APEC O1], gi\|115513... gi\|26108859, gi\|... - gi\|26248454\|ref\|NP_754494.1\| hypothetical protein c2606 [Escherichia coli CFT073], gi\|26108859\|gb\|AA...	156.0	[0..1]	[110..14]
gi\|74312605, gi\|... - gi\|74312605\|ref\|YP_311024.1\| hypothetical protein SSON_2133 [Shigella sonnei Ss046], gi\|73856082\|gb\|... gi\|82543454, gi\|... - gi\|82543454\|ref\|YP_407401.1\| hypothetical protein SBO_0906 [Shigella boydii Sb227], gi\|81244865\|gb\|A...	155.0	[0..1]	[110..14]
gi\|49176186, gi\|... - gi\|49176186\|ref\|NP_416584.3\| hypothetical protein b2080 [Escherichia coli K12], gb\|AAC75141.1\| orf, ... gi\|7466285 - gi\|7466285\|pir\|\|G64974 hypothetical protein b2080 - Escherichia coli (strain K-12)	155.0	[0..1]	[110..14]
gi\|49529919, gi\|... - gi\|50083943\|ref\|YP_045453.1\| hypothetical protein ACIAD0721 [Acinetobacter sp. ADP1], gi\|49529919\|em...	155.0	[0..1]	[110..2]
gi\|30063525, gi\|... - gi\|30063525\|ref\|NP_837696.1\| hypothetical protein S2270 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|110806050, gi... - gi\|110806050\|ref\|YP_689570.1\| hypothetical protein SFV_2141 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24113462, gi\|... - gi\|24113462\|ref\|NP_707972.1\| hypothetical protein SF2145 [Shigella flexneri 2a str. 301], gi\|2405249...	155.0	[0..1]	[110..14]
gi\|25358971, gi\|... - pir\|\|C85835 hypothetical protein Z3249 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12516289, gi\|... - gi\|15802561\|ref\|NP_288588.1\| hypothetical protein Z3249 [Escherichia coli O157:H7 EDL933], gi\|125162... gi\|13362357 - gi\|13362357\|dbj\|BAB36311.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13362357 - gi\|13362357\|dbj\|BAB36311.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai]	155.0	[0..1]	[110..14]
gi\|77457531, gi\|... - gi\|77457531\|ref\|YP_347036.1\| hypothetical protein Pfl01_1304 [Pseudomonas fluorescens Pf0-1], gi\|773...	153.0	[0..1]	[110..1]
gi\|21958152, gi\|... - gi\|22125279\|ref\|NP_668702.1\| hypothetical protein y1380 [Yersinia pestis KIM], gi\|21958152\|gb\|AAM849... gi\|45442493, gi\|... - gi\|45442493\|ref\|NP_994032.1\| hypothetical protein YP_2720 [Yersinia pestis biovar Microtus str. 9100...	153.0	[0..3]	[110..19]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGWYELSKS SNDQFKFVLK AGNGEVILTS ELYTGKSGAM NGIESVQTNS PIEARYAKEV  60
   61 AKNDKPYFNL KAANHQIIGT SQMYSSTAAR DNGIKSVMEN GKTTTIKDLT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.746	c.52.2	tRNA splicing endonuclease, C-terminal domain
View	Download	0.743	d.198.1	Type III secretory system chaperone
View	Download	0.688	c.55.1	Actin-like ATPase domain
View	Download	0.683	d.110.7	Description not found.
View	Download	0.663	c.55.3	Ribonuclease H-like
View	Download	0.663	c.55.3	Ribonuclease H-like
View	Download	0.658	c.52.1	Restriction endonuclease-like
View	Download	0.658	c.52.1	Restriction endonuclease-like
View	Download	0.648	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.593	d.58.26	GHMP Kinase, C-terminal domain
View	Download	0.462	g.28.1	Thyroglobulin type-1 domain
View	Download	0.455	c.47.1	Thioredoxin-like
View	Download	0.438	d.74.3	RBP11-like subunits of RNA polymerase
View	Download	0.434	c.51.2	TolB, N-terminal domain
View	Download	0.427	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits