YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350246, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	410 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350246, gi|....

Description	E-value	Query Range	Subject Range
gi\|88660702 - gi\|88660702\|gb\|ABD48098.1\| periplasmic Fe-hydrogenase large subunit [Shewanella decolorationis]	466.0	[0..1]	[410..1]
gi\|82498463, gi\|... - gi\|82498463\|ref\|ZP_00883959.1\| Ferredoxin hydrogenase [Shewanella sp. MR-4], gi\|82403549\|gb\|EAP44274...	462.0	[0..1]	[410..1]
gi\|78688303, gi\|... - gi\|78688303\|ref\|ZP_00853010.1\| Ferredoxin hydrogenase [Shewanella sp. ANA-3], gi\|78503967\|gb\|EAP1755...	460.0	[0..1]	[410..1]
gi\|125972863, gi... - gi\|67916533\|ref\|ZP_00510240.1\| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain:Iron hydroge...	405.0	[0..2]	[405..127]
gi\|89897458, gi\|... - gi\|89897458\|ref\|YP_520945.1\| putative hydrogenase large subunit [Desulfitobacterium hafniense Y51], ...	405.0	[0..8]	[401..90]
gi\|109641296, gi... - gi\|68206249\|ref\|ZP_00558440.1\| Twin-arginine translocation pathway signal [Desulfitobacterium hafnie...	405.0	[0..8]	[401..62]
gi\|4927278 - gi\|4927278\|gb\|AAD33071.1\| hydrogenase-1 [Clostridium thermocellum]	402.0	[0..2]	[405..125]
gi\|82402638, gi\|... - gi\|82499410\|ref\|ZP_00884856.1\| NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chai...	398.0	[0..9]	[406..135]
gi\|167037864, gi... - gi\|76795773\|ref\|ZP_00778144.1\| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase, s... gi\|241884287, gi... - gi\|241903376\|ref\|ZP_04788101.1\| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii Ako-1...	397.0	[0..5]	[406..131]
gi\|1914864\|emb\|C... - cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans] gi\|1914864 - gi\|1914864\|emb\|CAA72423.1\| cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans]	397.0	[0..14]	[402..27]

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Predicted Domain #1

Region A:
Residues: [1-410]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTTYQPGE IQGLIKINAS KCKGCDACKQ FCPTHAINGA SGAVHSIDED KCLSCGQCLI  60
   61 NCPFSAIEET HSALETVIKK LADKNTTVVG IIAPAVRVAI GEEFGLGTGE LVTGKLYGAM 120
  121 NQAGFKIFDC NFAADLTIME EGSEFIHRLH ANVKGEANAG PLPQFTSCCP GWVRYLETRY 180
  181 PALLPNLSTA KSPQQMAGTV AKTYGAKVYQ MQPENIFTVS VMPCTSKKLE ASRPEFNSAW 240
  241 QYHQEHGANS PSYQDIDAVL TTREMAQLLK LLDIDLANTA EYQGDSLFSE YTGAGTIFGT 300
  301 TGGVMEAALR TAHKVLTGTE MAKLEFEPVR GLKGVKSASV SLFDTELNQD VTVNVAVVHD 360
  361 MGNNIEPVLR DVMAGTSPYH FIEVMNCAGG CVNGGGQPIE GKGSSWLGNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1hfeL
Description:	Fe-only hydrogenase larger subunit, C-domain; Fe-only hydrogenase larger subunit, N-domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits