YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350247, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350247, gi|....

Description	E-value	Query Range	Subject Range
gi\|4927278 - gi\|4927278\|gb\|AAD33071.1\| hydrogenase-1 [Clostridium thermocellum]	166.0	[0..6]	[103..471]
gi\|125972863, gi... - gi\|67916533\|ref\|ZP_00510240.1\| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain:Iron hydroge...	165.0	[0..6]	[103..473]
gi\|40736851, gi\|... - gi\|9837540\|gb\|AAG00591.1\|AF289201_1 Fe-hydrogenase precursor [Chlamydomonas reinhardtii], gi\|4073685...	152.0	[0..6]	[100..390]
gi\|20807375, gi\|... - gi\|20807375\|ref\|NP_622546.1\| NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain ... gi\|20807375 - gi\|20807375\|ref\|NP_622546.1\| NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain ...	151.0	[0..6]	[102..473]
gi\|19547863 - gi\|19547863\|gb\|AAK60409.1\| hydrogenase [Neocallimastix frontalis]	149.0	[0..5]	[103..524]
gi\|50953715 - gi\|50953715\|gb\|AAT90438.1\| plastid FeFe-hydrogenase precursor [Chlamydomonas moewusii]	149.0	[0..6]	[100..351]
gi\|82402638, gi\|... - gi\|82499410\|ref\|ZP_00884856.1\| NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chai...	148.0	[0..6]	[101..473]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKKHLFAE DSFFLSRRKF MAVGAAFVAA LAIPIGWFTS KLERRNEYIK ARSQGLYKDD  60
   61 SLAKTRVSHA NPAVEKYYKE FGGEPLGHMS HELLHTHFVD RTKLSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1hfeS
Description:	Fe-only hydrogenase smaller subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits