YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350304, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350304, gi|....

Description	E-value	Query Range	Subject Range
gi\|2147835, gi\|1... - pir\|\|I84531 outer membrane protein A - Escherichia fergusonii (ATCC 35469) (fragment), gi\|146983\|gb...	201.0	[0..3]	[226..4]
OMPA_SHIDY - Outer membrane protein A OS=Shigella dysenteriae GN=ompA PE=3 SV=1	197.0	[0..3]	[226..103]
gi\|37525710, gi\|... - gi\|37525710\|ref\|NP_929054.1\| outer membrane protein A [Photorhabdus luminescens subsp. laumondii TTO...	195.0	[0..2]	[227..109]
gi\|81240395, gi\|... - gi\|82776247\|ref\|YP_402596.1\| outer membrane protein A [Shigella dysenteriae Sd197], gi\|81240395\|gb\|A...	195.0	[0..3]	[226..103]
gi\|26107378, gi\|... - gi\|26246978\|ref\|NP_753018.1\| outer membrane protein A [Escherichia coli CFT073], gi\|26107378\|gb\|AAN7...	194.0	[0..3]	[226..132]
gi\|38000008 - gi\|38000008\|gb\|AAP74760.2\| outer membrane protein A precursor [Shigella flexneri 2a]	194.0	[0..3]	[226..82]
gi\|51235576 - gi\|51235576\|gb\|AAT98589.1\| outer membrane protein A [Escherichia coli] gi\|157159269, gi... - gi\|75190025\|ref\|ZP_00703292.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ...	194.0	[0..3]	[226..103]
gi\|29137907, gi\|... - gi\|29142277\|ref\|NP_805619.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar T... gi\|16759951 - gi\|16759951\|ref\|NP_455568.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar T... OMPA_SALTI - Outer membrane protein A OS=Salmonella typhi GN=ompA PE=3 SV=1 OMPA_SALTI - Outer membrane protein A OS=Salmonella typhi GN=ompA PE=3 SV=1	194.0	[0..3]	[226..103]
gi\|110342738, gi... - gi\|110641146\|ref\|YP_668876.1\| outer membrane protein A [Escherichia coli 536], gi\|110342738\|gb\|ABG68...	194.0	[0..3]	[226..103]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKPSIKSLP ASKLAIVVIT SALIASGCTT VNPYTNEQQT AKATTGALIG AVAGAAVGVA  60
   61 SSSKSDRGKG ALIGAASGAA LGGGIGYYMD VQETKLRQQL AS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1qjpA
Description:	Outer membrane protein A (OMPA) transmembrane domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
porin activity	3.72603691775929	bayes_pls_golite062009
wide pore channel activity	2.56764837317779	bayes_pls_golite062009
channel activity	0.500502774665998	bayes_pls_golite062009
passive transmembrane transporter activity	0.500502774665998	bayes_pls_golite062009
transporter activity	0.32956132877646	bayes_pls_golite062009
transmembrane transporter activity	0.31625101261287	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [103-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGVSVTRSGD NIILNMPNEV TFGVDQTELS DGAKRVLNSV ALVAKEYSKT QLNVLGYTDS  60
   61 SGSDSYNLRL SQVRASEVGN YLMSKGVASA RVKSKGMGEA SPIASNANAE GRAQNRRVEI 120
  121 VLTPTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: