YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350367, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	477 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350367, gi|....

Description	E-value	Query Range	Subject Range
gi\|90021669, gi\|... - gi\|90021669\|ref\|YP_527496.1\| low molecular weight phosphotyrosine protein phosphatase [Saccharophagu...	268.0	[0..3]	[475..8]
gi\|82494896, gi\|... - gi\|82494896\|ref\|ZP_00880475.1\| Peptidoglycan-binding LysM [Shewanella sp. MR-4], gi\|82407140\|gb\|EAP4...	266.0	[0..1]	[477..1]
gi\|114046048, gi... - gi\|78689018\|ref\|ZP_00853684.1\| Peptidoglycan-binding LysM [Shewanella sp. MR-7], gi\|78511701\|gb\|EAP2...	264.0	[0..1]	[477..1]
gi\|117614352, gi... - gi\|78684162\|ref\|ZP_00848947.1\| Peptidoglycan-binding LysM [Shewanella sp. ANA-3], gi\|78507914\|gb\|EAP...	261.0	[0..1]	[477..1]
gi\|88772635, gi\|... - gi\|88796049\|ref\|ZP_01111734.1\| putative membrane-bound lytic murein transglycosylase [Alteromonas ma...	251.0	[0..42]	[475..68]
gi\|146294344, gi... - gi\|77815416\|ref\|ZP_00814648.1\| Peptidoglycan-binding LysM:SLT [Shewanella putrefaciens CN-32], gi\|77...	250.0	[0..1]	[477..1]
gi\|120557608, gi... - gi\|82744186\|ref\|ZP_00906774.1\| Peptidoglycan-binding LysM [Shewanella sp. W3-18-1], gi\|82718458\|gb\|E...	245.0	[0..1]	[477..1]
gi\|126175931, gi... - gi\|68540998\|ref\|ZP_00580746.1\| Peptidoglycan-binding LysM:SLT:MLTD_N [Shewanella baltica OS155], gi\|...	243.0	[0..1]	[477..1]
gi\|160859296, gi... - gi\|160873774\|ref\|YP_001553090.1\| MltD domain-containing protein [Shewanella baltica OS195], gi\|16085...	242.0	[0..1]	[477..1]
gi\|91223496, gi\|... - gi\|91223496\|ref\|ZP_01258761.1\| membrane-bound lytic murein transglycosylase D [Vibrio alginolyticus ...	242.0	[0..12]	[475..5]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKTFRQPHA LAAMVIAMLM AQLSGCATTS AQTSPTEFGA GLPEAEDHSE SAEPQSVEAE  60
   61 VIDERYADVW EKIQHARTID VHDDAEVRKQ RNFFDDKQKF MTQVTQRAEP FLYYIVSQLE 120
  121 ARNMPLELAL LPIVESGYNP LAQANGPAGL WQMIPATGRN FGLTINSAYD GRKDALASTD 180
  181 AVLDYLQHLY NTLGNDWINA VAGYNSGELV IKAAIDRNKA KGKPTDFWSL NIPARQVQTV 240
  241 PKWLAFIQII REPSHYNLKV MPIAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.09691
Match:	1qsaA
Description:	70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
penicillin binding	2.64957480679626	bayes_pls_golite062009
catalytic activity	1.95328415115451	bayes_pls_golite062009
lysozyme activity	1.83799209924951	bayes_pls_golite062009
drug binding	1.54697929389118	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
hydrolase activity	0.677491712259	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.45061419828567	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [266-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPFLERLPAP NGVEISQIAN AAGLTKAEFK TYNPGYRQSV IPSKGKYQIA LPIENIGHYQ  60
   61 ENQHKLYAQK RYDSQTYIVK SGDSLGTIAA KFDLSVKELK QANNLTSDRL KIGQELTLLT 120
  121 PMAANDNEPE PVKT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [400-477]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KANTDKSSTK ANASSTKATS SKSTDKPVAK AKTYKVKSGD SLDKIARKSK VKLADLMKWN  60
   61 QLNAKSIIKP GQELKISE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.26
Match:	2djpA
Description:	No description for 2djpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: