YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375551, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375551, gi|....

Description	E-value	Query Range	Subject Range
gi\|20090742, gi\|... - gi\|20090742\|ref\|NP_616817.1\| hypothetical protein MA1892 [Methanosarcina acetivorans C2A], gi\|199157...	215.0	[0..4]	[263..282]
gi\|75911046, gi\|... - gi\|75911046\|ref\|YP_325342.1\| pentapeptide repeat-containing protein [Anabaena variabilis ATCC 29413]...	208.0	[0..2]	[265..262]
gi\|17132208, gi\|... - gi\|17230606\|ref\|NP_487154.1\| hypothetical protein all3114 [Nostoc sp. PCC 7120], gi\|17132208\|dbj\|BAB... gi\|25530803 - pir\|\|AC2195 hypothetical protein all3114 [imported] - Nostoc sp. (strain PCC 7120)	208.0	[0..2]	[265..262]
gi\|53688396 - gi\|53688396\|ref\|ZP_00112281.2\| COG1357: Uncharacterized low-complexity proteins [Nostoc punctiforme ...	208.0	[0..2]	[263..309]
gi\|77973166 - gi\|77973166\|ref\|ZP_00828717.1\| COG1357: Uncharacterized low-complexity proteins [Yersinia frederikse...	207.0	[0..7]	[263..158]
gi\|21673871, gi\|... - gi\|21673871\|ref\|NP_661936.1\| pentapeptide repeat-containing protein [Chlorobium tepidum TLS], gi\|216...	203.0	[0..6]	[263..53]
gi\|71674829, gi\|... - gi\|71674829\|ref\|ZP_00672575.1\| Pentapeptide repeat [Trichodesmium erythraeum IMS101], gi\|71671805\|gb...	201.0	[0..3]	[258..33]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGGDSSHY THYKSGLPVS RFIEYPLSLS MPLTQTPLRK VYGRNRGPMT TDANTSANIT  60
   61 AQTTIVQRVS LRGRHFFAQQ FIGLDETQAH WQDLEFEECE FHDCQFSDST FRQCKFIDCR 120
  121 FVGCNLSLVK VSLSHFNGVS FEECKLVGVD WTRASWPRVA FAAPFTFKAC ILNDSSFMGI 180
  181 KLDEMVLEAC KVHDVDFREG SFNRANFTFS DFRHSLFGRT ELLEADFSEA TDYDIDIFNN 240
  241 KIKGAKFSRD EAIRLLNGLD ITLVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2j8kA
Description:	No description for 2j8kA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.0435317318724765	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: