YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350574, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350574, gi|....

Description	E-value	Query Range	Subject Range
gi\|41205692 - gi\|41205692\|gb\|AAR99612.1\| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]	258.0	[0..2]	[296..3]
gi\|7437238 - pir\|\|H69105 dTDP-glucose 4,6-dehydratase - Methanobacterium thermoautotrophicum (strain Delta H) gi\|15679777, gi\|... - gi\|2622920\|gb\|AAB86255.1\| dTDP-glucose 4,6-dehydratase [Methanothermobacter thermautotrophicus str. ...	247.0	[0..1]	[296..1]
gi\|99077994, gi\|... - gi\|99077994\|ref\|YP_611253.1\| dTDP-glucose 4,6-dehydratase [Silicibacter sp. TM1040], gi\|99034937\|gb\|...	247.0	[0..2]	[296..1]
gi\|16357461 - gi\|16357461\|gb\|AAL18013.1\| dTDP-glucose 4,6-dehydratase [Aneurinibacillus thermoaerophilus]	246.0	[0..2]	[296..1]
gi\|68247685, gi\|... - gi\|69256133\|ref\|ZP_00605748.1\| dTDP-glucose 4,6-dehydratase [Magnetococcus sp. MC-1], gi\|68247685\|gb...	246.0	[0..1]	[296..1]
gi\|83955937, gi\|... - gi\|83955937\|ref\|ZP_00964448.1\| dTDP-glucose 4,6-dehydratase [Sulfitobacter sp. NAS-14.1], gi\|8383970...	245.0	[0..2]	[296..1]
gi\|49529344, gi\|... - gi\|50083368\|ref\|YP_044878.1\| dTDP-D-glucose-4,6-dehydratase [Acinetobacter sp. ADP1], gi\|49529344\|em...	245.0	[0..1]	[296..1]
gi\|255091271 - gi\|255091271\|ref\|ZP_05320749.1\| dTDP-glucose 4,6-dehydratase [Clostridium difficile CIP 107932] gi\|145956151, gi... - gi\|90576318\|ref\|ZP_01232783.1\| hypothetical protein CdifQ_02000253 [Clostridium difficile QCD-32g58]... gi\|255312930 - gi\|255312930\|ref\|ZP_05354513.1\| dTDP-glucose 4,6-dehydratase [Clostridium difficile QCD-76w55] gi\|255515689 - gi\|255515689\|ref\|ZP_05383365.1\| dTDP-glucose 4,6-dehydratase [Clostridium difficile QCD-97b34] gi\|255648783 - gi\|255648783\|ref\|ZP_05395685.1\| dTDP-glucose 4,6-dehydratase [Clostridium difficile QCD-37x79] gi\|254973886 - gi\|254973886\|ref\|ZP_05270358.1\| dTDP-glucose 4,6-dehydratase [Clostridium difficile QCD-66c26]	244.0	[0..1]	[296..1]
gi\|22726352, gi\|... - gi\|32456000\|ref\|NP_862002.1\| rb127 [Ruegeria sp. PR1b], gi\|22726352\|gb\|AAN05148.1\| RB127 [Ruegeria s...	244.0	[0..2]	[296..1]

Back

Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANIMVTGAT GLLGRAVVKQ LTAAGHRVIA TGFSCAEANI HKLDLTQAIA VEAFIARERP  60
   61 EVIVHCAAER RPDVSEQSPE QALALNLSAS QTLAKAAKQH GAWLLYISTD YVFDGTTPPY 120
  121 AEDAAPNPVN FYGESKLQGE TCVLNTDSRF AVLRLPILYG EVTQLSESAV LVLINQLLDS 180
  181 RPQRVDAWAI RSPTSTADIA GAIAKLIKRQ LHAADVLGIY HFSSPQTMTK YQMLLSLGEL 240
  241 LAIDTAHLTP ELTPMDSAKR PQNCTLSCGR LAALGIYSEL EFSAGLNQAL AQSSAALAAV 300
  301 GLKLKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	1vl0A
Description:	Crystal structure of DTDP-4-dehydrorhamnose reductase, rfbD ortholog (CAC2315) from Clostridium acetobutylicum at 2.05 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methionine adenosyltransferase regulator activity	5.88466784940665	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity	0.9367410227151	bayes_pls_golite062009
nucleic acid binding	0.868888700854563	bayes_pls_golite062009
DNA binding	0.790382977752475	bayes_pls_golite062009
transcription regulator activity	0.613310508772122	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.418775403210681	bayes_pls_golite062009
binding	0.390159270709819	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.32207755075663	bayes_pls_golite062009
transcription factor activity	0.11102650759187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: