Protein: | gi|24350697, gi|... |
Organism: | Shewanella oneidensis MR-1 |
Length: | 271 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350697, gi|....
Description | E-value | Query Range |
Subject Range |
|
177.0 | [0..2] | [271..49] |
|
175.0 | [0..2] | [269..35] |
|
174.0 | [0..2] | [271..1] |
|
170.0 | [0..1] | [271..1] |
|
169.0 | [0..1] | [271..1] |
|
167.0 | [0..11] | [271..1] |
|
166.0 | [0..1] | [271..87] |
|
165.0 | [0..1] | [271..1] |
Region A: Residues: [1-62] |
1 11 21 31 41 51 | | | | | | 1 MVKLSQRKAM AQHAVANRKI SIRLACAAFC ISETCYRYRR VNDDENAEIA EFLVELTEKE 60 61 SD |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [63-271] |
1 11 21 31 41 51 | | | | | | 1 WGFGQCFNYL RNVKGFAWNH KRVYRIYCEL ALNLRIKPRR RLKRNAPEPL KEPTKANQVW 60 61 SIDFMHDQLS DGRSYRLFNV IDDFKREGLA IEAGFSLPTM RVIRTLNQLL EGRTKPIAIR 120 121 CDNGPEFISH EFTEWAKKHE IRIDYIQPGK PQQNAYIERH NKTIRYSWVS KHLFDTLEEV 180 181 QDYATKWLWF YNHERPHKAN GGKPPLMVA |
Detection Method: | |
Confidence: | 3.7 |
Match: | 1k6yA |
Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
catalytic activity | 1.53924789709051 | bayes_pls_golite062009 |
nuclease activity | 1.33447740033502 | bayes_pls_golite062009 |
hydrolase activity, acting on ester bonds | 1.23347009562032 | bayes_pls_golite062009 |
hydrolase activity | 1.22075366957547 | bayes_pls_golite062009 |
exonuclease activity | 1.20458535230258 | bayes_pls_golite062009 |
transposase activity | 0.965908684749648 | bayes_pls_golite062009 |
deoxyribonuclease activity | 0.330313608754008 | bayes_pls_golite062009 |
ribonuclease activity | 0.26323966197813 | bayes_pls_golite062009 |
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.248165509716873 | bayes_pls_golite062009 |