YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350745, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350745, gi|....

Description	E-value	Query Range	Subject Range
gi\|77633325 - gi\|77633325\|ref\|ZP_00795462.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia pestis... gi\|77630749, gi\|... - gi\|77630749\|ref\|ZP_00793335.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia pseudo... gi\|21957065, gi\|... - gi\|22124294\|ref\|NP_667717.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pestis KIM]... gi\|167401808, gi... - gi\|167401808\|ref\|ZP_02307296.1\| putative uroporphyrinogen III methylase [Yersinia pestis biovar Anti... gi\|45442947, gi\|... - gi\|45442947\|ref\|NP_994486.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pestis biov...	325.0	[0..51]	[411..4]
gi\|28899764, gi\|... - gi\|28899764\|ref\|NP_799369.1\| putative uroporphyrin-III C-methyltransferase [Vibrio parahaemolyticus ... gi\|28808016 - gi\|28808016\|dbj\|BAC61253.1\| putative uroporphyrin-III C-methyltransferase [Vibrio parahaemolyticus R...	324.0	[0..26]	[409..16]
gi\|162418964, gi... - gi\|162418964\|ref\|YP_001605127.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pestis ... gi\|165926352, gi... - gi\|165926352\|ref\|ZP_02222184.1\| putative uroporphyrinogen III methylase [Yersinia pestis biovar Orie... gi\|165939114, gi... - gi\|165939114\|ref\|ZP_02227665.1\| putative uroporphyrinogen III methylase [Yersinia pestis biovar Orie... gi\|165989458, gi... - gi\|166011689\|ref\|ZP_02232587.1\| putative uroporphyrinogen III methylase [Yersinia pestis biovar Anti... gi\|145600719, gi... - gi\|145600719\|ref\|YP_001164795.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pestis ... gi\|25511299 - pir\|\|AC0469 probable uroporphyrin-III C-methyltransferase hemX [imported] - Yersinia pestis (strain ... gi\|229682466, gi... - gi\|229900447\|ref\|ZP_04515576.1\| predicted uroporphyrinogen III methylase [Yersinia pestis Nepal516],... gi\|170026229, gi... - gi\|170026229\|ref\|YP_001722734.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pseudot... gi\|108806168, gi... - gi\|108806168\|ref\|YP_650084.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pestis Ant... gi\|229706127, gi... - gi\|229837184\|ref\|ZP_04457349.1\| predicted uroporphyrinogen III methylase [Yersinia pestis Pestoides ... gi\|115349465, gi... - gi\|218930854\|ref\|YP_002348729.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pestis ... gi\|166213622, gi... - gi\|166213622\|ref\|ZP_02239657.1\| putative uroporphyrinogen III methylase [Yersinia pestis biovar Anti... gi\|167420871, gi... - gi\|167420871\|ref\|ZP_02312624.1\| putative uroporphyrinogen III methylase [Yersinia pestis biovar Orie... gi\|153997093, gi... - gi\|153997093\|ref\|ZP_02022226.1\| putative uroporphyrin-III C-methyltransferase [Yersinia pestis CA88-... gi\|167054823, gi... - gi\|167426304\|ref\|ZP_02318057.1\| putative uroporphyrinogen III methylase [Yersinia pestis biovar Medi... gi\|229695910, gi... - gi\|229839544\|ref\|ZP_04459703.1\| predicted uroporphyrinogen III methylase [Yersinia pestis biovar Ori... gi\|153946970, gi... - gi\|153946970\|ref\|YP_001399193.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pseudot... gi\|167470635 - gi\|167470635\|ref\|ZP_02335339.1\| putative uroporphyrinogen III methylase [Yersinia pestis FV-1] gi\|229900107, gi... - gi\|229900107\|ref\|ZP_04515244.1\| predicted uroporphyrinogen III methylase [Yersinia pestis biovar Ori...	324.0	[0..51]	[411..1]
gi\|89101533 - gi\|89101533\|ref\|ZP_01174273.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia pestis...	323.0	[0..60]	[411..1]
gi\|51587820, gi\|... - gi\|51594538\|ref\|YP_068729.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pseudotuber... gi\|186893536, gi... - gi\|186893536\|ref\|YP_001870648.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pseudot... Q66G02\|Q66G02_YERPS - Putative uroporphyrin-III C-methyltransferase - Yersinia pseudotuberculosis	321.0	[0..51]	[411..1]
gi\|116184835, gi... - gi\|254230105\|ref\|ZP_04923501.1\| uroporphyrin-III C-methyltransferase [Vibrio sp. Ex25], gi\|194538795...	317.0	[0..56]	[409..7]
gi\|91227536, gi\|... - gi\|91227536\|ref\|ZP_01261873.1\| putative uroporphyrin-III C-methyltransferase [Vibrio alginolyticus 1...	310.0	[0..38]	[409..16]
gi\|90324686, gi\|... - gi\|90414239\|ref\|ZP_01222219.1\| hypothetical uroporphyrin-III C-methyltransferase [Photobacterium pro...	307.0	[0..16]	[406..19]
gi\|46915026, gi\|... - gi\|54310583\|ref\|YP_131603.1\| uroporphyrin-III C-methyltransferase [Photobacterium profundum SS9], gi...	306.0	[0..16]	[406..19]
gi\|37528463, gi\|... - gi\|37528463\|ref\|NP_931808.1\| putative uroporphyrinogen III C-methyltransferase [Photorhabdus lumines...	305.0	[0..45]	[411..1]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNNKHDAQS PESQATSILT SSVNTDDVAA KGAAPEPQAI KAEAQEIKHQ EAKPLEAKPE  60
   61 PQIAKSATVS RQVTQVNRSS WAIRFGVLLT LGLTASTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGGYLLYQHM QQQIQVQAAQ NIALQDQLQQ ALIVPNQRIA QLEQQQLSDA KTFQELSKLA  60
   61 TDQSQLQDRL NKLAQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [175-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTHWMASEA EYLVNMAGRK LWLEKDPRTA TDLLKSADET IAAMNNPALL PIRKALAKDI  60
   61 AATTNLKSAD IEGSVLALDA LIGQLDKLPL NR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [267-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADGEASTAED TTISGDLNDW QSNLSKTWKA LTQDFITIRH RTADVPALLA PDQQWYLVEN  60
   61 IRHKLLQSQL ALYRYDRAAY HQSLMMARQW IQSYFDVQAH QTSEAIAAID KLATLELDPI 120
  121 TLKAFEAKPL LLQLTSYGEL TSLEEPQL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits