YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350787, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350787, gi|....

Description	E-value	Query Range	Subject Range
gi\|28900071, gi\|... - gi\|28900071\|ref\|NP_799726.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD ... gi\|28808354 - gi\|28808354\|dbj\|BAC61559.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2...	308.0	[0..1]	[290..1]
gi\|91191158, gi\|... - gi\|91224247\|ref\|ZP_01259510.1\| putative transcription regulator protein [Vibrio alginolyticus 12G01]...	308.0	[0..1]	[290..1]
gi\|27367995, gi\|... - gi\|27367995\|ref\|NP_763522.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359568\|gb\|AAO...	307.0	[0..3]	[290..5]
gi\|116185384, gi... - gi\|75856032\|ref\|ZP_00763668.1\| COG0583: Transcriptional regulator [Vibrio sp. Ex25], gi\|254227935\|re...	306.0	[0..1]	[290..1]
gi\|37200667, gi\|... - gi\|37676126\|ref\|NP_936522.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200667\|dbj\|BA...	306.0	[0..3]	[290..5]
gi\|114045851, gi... - gi\|78689367\|ref\|ZP_00854030.1\| transcriptional regulator, LysR family [Shewanella sp. MR-7], gi\|7851...	297.0	[0..1]	[290..1]
gi\|117614564, gi... - gi\|78685922\|ref\|ZP_00850696.1\| transcriptional regulator, LysR family [Shewanella sp. ANA-3], gi\|785...	294.0	[0..1]	[290..1]
SO0369 - transcriptional regulator LysR family gi\|24345816, gi\|... - gi\|24371967\|ref\|NP_716009.1\| LysR family transcriptional regulator [Shewanella oneidensis MR-1], gi\|...	294.0	[0..1]	[290..1]
gi\|82406257, gi\|... - gi\|82495665\|ref\|ZP_00881239.1\| transcriptional regulator, LysR family [Shewanella sp. MR-4], gi\|8240...	292.0	[0..1]	[290..1]
gi\|90438698, gi\|... - gi\|90579813\|ref\|ZP_01235621.1\| transcriptional regulator, LysR family protein [Vibrio angustum S14],...	291.0	[0..9]	[290..10]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIRSLKLYL HLCDSLHFAK TAEQMHVSPS TLSRALQRLE EEVNAKLFER DNRSVTLTHA  60
   61 GREFKLFAEQ TLHHWRNLRH SIDLKQDVLR GTLNLYCSVT AAYSHLPQLL ERFRQEHPFV 120
  121 EIALTTGDAA NALAEIQQNR ADIAIAALPD PFPATLHFAK IDDVPLSLIA PTMRCAVQQQ 180
  181 ISQTQIDWAR VPFIIPDHGP GRRRADNWFK QMGISPNIYA QVSGQEAIAS MVALGCGVSI 240
  241 SPEVVINNSP VRDRIQLLPS PVSIAPFELG CCCKVKRLGD PIVNAFLEAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	2h99A
Description:	No description for 2h99A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits