YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350797, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350797, gi|....

Description	E-value	Query Range	Subject Range
gi\|148655927, gi... - gi\|148655927\|ref\|YP_001276132.1\| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ro...	175.0	[0..4]	[188..1]
gi\|71282673, gi\|... - gi\|71482494\|ref\|ZP_00662180.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	174.0	[0..5]	[188..22]
gi\|76164515, gi\|... - gi\|76260598\|ref\|ZP_00768231.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	172.0	[0..4]	[191..1]
gi\|68512319, gi\|... - gi\|68561487\|ref\|ZP_00600782.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	171.0	[0..4]	[200..1]
gi\|189339739, gi... - gi\|67918570\|ref\|ZP_00512166.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	170.0	[0..5]	[188..1]
gi\|78165820, gi\|... - gi\|78185918\|ref\|YP_373961.1\| Fe-S-cluster-containing hydrogenase components 1-like [Pelodictyon lute...	169.0	[0..5]	[188..1]
gi\|217319958, gi... - gi\|217327591\|ref\|ZP_03443674.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. ... gi\|15832637, gi\|... - gi\|15832637\|ref\|NP_311410.1\| putative anaerobic dimethyl sulfoxide reductase chain B [Escherichia co... gi\|25285329 - pir\|\|G91051 hypothetical protein ECs3383 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|208725970, gi... - gi\|208806169\|ref\|ZP_03248506.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. ... gi\|15832637, gi\|... - gi\|15832637\|ref\|NP_311410.1\| putative anaerobic dimethyl sulfoxide reductase chain B [Escherichia co... gi\|208734401, gi... - gi\|208813124\|ref\|ZP_03254453.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. ... gi\|208741890, gi... - gi\|208821767\|ref\|ZP_03262087.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. ... gi\|209159219, gi... - gi\|209397819\|ref\|YP_002271991.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.... gi\|189003152, gi... - gi\|189003152\|gb\|EDU72138.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. EC40... gi\|168787867, gi... - gi\|189372381\|gb\|EDU90797.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. EC86... gi\|189378639, gi... - gi\|189378639\|gb\|EDU97055.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. EC50... gi\|195936663 - gi\|195936663\|ref\|ZP_03082045.1\| putative anaerobic dimethyl sulfoxide reductase chain B [Escherichia... gi\|168756293, gi... - gi\|189356621\|gb\|EDU75040.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. EC44... gi\|189368397, gi... - gi\|189368397\|gb\|EDU86813.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. EC45... gi\|189362214, gi... - gi\|189362214\|gb\|EDU80633.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. EC44... gi\|168773565, gi... - gi\|187770599\|gb\|EDU34443.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. EC41... gi\|254593867, gi... - gi\|254794467\|ref\|YP_003079304.1\| putative dimethyl sulfoxide reductase subunit B [Escherichia coli O... gi\|168748420, gi... - gi\|188017042\|gb\|EDU55164.1\| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str. EC41...	166.0	[0..5]	[194..13]
gi\|68553334, gi\|... - gi\|68553334\|ref\|ZP_00592711.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	166.0	[0..5]	[203..86]
gi\|119353318, gi... - gi\|67936163\|ref\|ZP_00529175.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	165.0	[0..5]	[188..1]
gi\|78172117, gi\|... - gi\|78189918\|ref\|YP_380256.1\| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium chlor...	165.0	[0..5]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEPTQYGFY VDTTKCSGCK TCQVACKDRS DIEVGKQWRR TYEYCGGNWT ADGQGAYHQD  60
   61 VFAYYISISC NHCSNPVCVK ACPTGAMYKE RSTGLVKVNQ DLCIGCESCA RACPYDAPQI 120
  121 DPQRKVMTKC DGCSDRVAKG LKPSCVMSCP QRALDFGLIA ELKQQYGNDS DISGLPSSSI 180
  181 THPNLVLKVH AKSGQRGEII NITEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1kqfB
Description:	Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	10.9674358961972	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	7.27554333181693	bayes_pls_golite062009
iron-sulfur cluster binding	6.49651154487804	bayes_pls_golite062009
metal cluster binding	6.49651154487804	bayes_pls_golite062009
oxidoreductase activity	5.98361135786786	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.77927347135001	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	5.39747453448396	bayes_pls_golite062009
electron carrier activity	5.05393703018095	bayes_pls_golite062009
NADH dehydrogenase activity	3.13953145151561	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	2.76338281383262	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	2.70037803782769	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	2.09041948600744	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.80621486978907	bayes_pls_golite062009
catalytic activity	0.488483980994331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: