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View Structure Prediction Details

Protein: gi|24375905, gi|...
Organism: Shewanella oneidensis MR-1
Length: 418 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375905, gi|....

Description E-value Query
Range
Subject
Range
gi|166853488, gi... - gi|167039248|ref|YP_001662233.1| integral membrane sensor signal transduction histidine kinase [Ther...
gi|241904558, gi... - gi|241904558|ref|ZP_04789245.1| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g...
gi|76588655, gi|... - gi|76795887|ref|ZP_00778257.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...
269.0 [0..93] [417..133]
gi|91203275 - gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
261.0 [0..109] [418..179]
gi|20808918 - gi|20808918|ref|NP_624089.1| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...
gi|20808918, gi|... - gi|20808918|ref|NP_624089.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...
260.0 [0..92] [417..131]
gi|45358866, gi|... - gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis S2], g...
259.0 [0..62] [416..242]
gi|145411509 - gi|145411509|gb|ABP68413.1| putative ethylene receptor [Cucumis melo]
ETR1_CUCMN - Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1
250.0 [0..13] [418..146]
gi|89154470, gi|... - gi|89207576|ref|ZP_01186114.1| PAS [Bacillus weihenstephanensis KBAB4], gi|89154470|gb|EAR74501.1| P...
250.0 [0..1] [416..164]
gi|51974390, gi|... - gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L], gi|51974390|gb...
250.0 [0..1] [416..164]
gi|218540301, gi... - gi|218848250|ref|YP_002455135.1| sensor histidine kinase [Bacillus cereus AH820], gi|218540301|gb|AC...
gi|229164673, gi... - gi|229164673|ref|ZP_04292537.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803], gi|2...
gi|116585027, gi... - gi|190015346|ref|YP_001967073.1| sensor histidine kinase [Bacillus cereus], gi|190015080|ref|YP_0019...
gi|44004552, gi|... - gi|44004552|ref|NP_982221.1| sensor histidine kinase [Bacillus cereus ATCC 10987], gi|42741618|gb|AA...
249.0 [0..3] [416..18]
gi|47557784, gi|... - gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241], gi|4755778...
249.0 [0..1] [416..164]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIIGALLF ALYRQLIIEQ QYQVTQYLES ETQRYQQLAL TVDRRSFAAQ IRAADPQTAL  60
   61 IAWRNSYDMV GALSFMPEGM PM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPQTRDFPIL TGGPDKLHIL TGGLVMTRYG PVLIATRTDN LATLIDKFIS AAATAVMLTI  60
   61 VLTLALGYLF SKAILRRLVQ YNRLSEQIER GHYDTRLPLS W

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.48
Match: 2f95B
Description: M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [184-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQDEFDMLAL QFNNVLDILE NNLMAVRGVT DNIAHDLRTP LSHIRIGIEE LATKSPDEIS  60
   61 EGCAILTEEL DHCLATFDAM LSLTRIEEGQ QTLDLQELSL AQLCTDLLEM ADAVAESNEQ 120
  121 TLSLSLLADH KVHGDKYLLF QALYNLVDNA MKYSGQGARI DIIQSGAQIK ICDNGPGIPD 180
  181 DSKERVFERL VRLDPSRHLQ GTGLGLSMVK AILSRHNAQI TLSDNHPGLV VTIQF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.045757
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle