YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376064, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376064, gi|....

Description	E-value	Query Range	Subject Range
gi\|68514959, gi\|... - gi\|68547314\|ref\|ZP_00586852.1\| NapC/NirT cytochrome c, N-terminal [Shewanella amazonensis SB2B], gi\|...	285.0	[0..3]	[186..9]
gi\|78360571, gi\|... - gi\|78367336\|ref\|ZP_00837606.1\| NapC/NirT cytochrome c, N-terminal [Shewanella sp. PV-4], gi\|78360571...	284.0	[0..3]	[186..9]
gi\|124509783, gi... - gi\|124546731\|ref\|ZP_01705766.1\| periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/N... gi\|82720354, gi\|... - gi\|82742270\|ref\|ZP_00904968.1\| Periplasmic nitrate reductase c-type cytochrome, NapC/NirT [Shewanell... gi\|77812813, gi\|... - gi\|77812813\|ref\|ZP_00812096.1\| NapC/NirT cytochrome c, N-terminal [Shewanella putrefaciens CN-32], g...	283.0	[0..3]	[186..9]
gi\|217973548, gi... - gi\|217973548\|ref\|YP_002358299.1\| periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/... gi\|160860582, gi... - gi\|160875060\|ref\|YP_001554376.1\| NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type ...	283.0	[0..3]	[186..9]
gi\|91714858, gi\|... - gi\|91792856\|ref\|YP_562507.1\| periplasmic nitrate reductase c-type cytochrome, NapC/NirT [Shewanella ...	282.0	[0..3]	[186..9]
gi\|113889070, gi... - gi\|78689746\|ref\|ZP_00854404.1\| Periplasmic nitrate reductase c-type cytochrome, NapC/NirT [Shewanell... gi\|117920347, gi... - gi\|78684947\|ref\|ZP_00849728.1\| Periplasmic nitrate reductase c-type cytochrome, NapC/NirT [Shewanell...	282.0	[0..3]	[186..9]
gi\|82496358, gi\|... - gi\|82496358\|ref\|ZP_00881927.1\| Periplasmic nitrate reductase c-type cytochrome, NapC/NirT [Shewanell...	282.0	[0..3]	[186..9]
gi\|72121927, gi\|... - gi\|73538590\|ref\|YP_298957.1\| periplasmic nitrate reductase subunit NapC [Ralstonia eutropha JMP134],...	281.0	[0..3]	[186..9]
gi\|94412457, gi\|... - gi\|94412457\|ref\|ZP_01292377.1\| hypothetical protein PaerP_01005736 [Pseudomonas aeruginosa PA7], gi\|...	280.0	[0..3]	[186..12]
gi\|33576215, gi\|... - gi\|33601778\|ref\|NP_889338.1\| cytochrome C-type protein [Bordetella bronchiseptica RB50], gi\|33576215...	280.0	[0..3]	[185..12]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWRALFKPS AKYSILALLV VGIVIGVVGY FATQQTLHAT STDAFCMSCH SNHSLKNEVL  60
   61 ASAHGGGKAG VTVQCQDCHL PHGPVDYLIK KIIVSKDLYG FLTIDGFNTQ AWLDENRKEQ 120
  121 ADKALAYFRG NDSANCQHCH TRIYENQPET MKPMAVRMHT NNFKKDPETR KTCVDCHKGV 180
  181 AHPYPKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	2j7aC
Description:	No description for 2j7aC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits