YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351103, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351103, gi|....

Description	E-value	Query Range	Subject Range
COX11_MOUSE - Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Mus musculus GN=Cox11 PE=1 SV=1	290.0	[0..2]	[182..80]
gi\|109488791, gi... - ref\|XP_213433.2\| similar to COX11 homolog; cytochrome c oxidase subunit 11; cytochrome c oxidase ass...	290.0	[0..2]	[188..80]
gi\|61367959 - gi\|61367959\|gb\|AAX43073.1\| COX11-like cytochrome c oxidase assembly protein [synthetic construct]	288.0	[0..3]	[182..82]
COX11 - COX11 cytochrome c oxidase assembly homolog (yeast) gi\|60814946 - gi\|60814946\|gb\|AAX36326.1\| COX11-like cytochrome c oxidase assembly protein [synthetic construct]	288.0	[0..3]	[182..82]
gi\|55730891 - gi\|55730891\|emb\|CAH92164.1\| hypothetical protein [Pongo abelii] gi\|55730891\|emb\|... - hypothetical protein [Pongo pygmaeus]	285.0	[0..3]	[182..82]
gi\|114669577 - gi\|114669577\|ref\|XP_001160768.1\| PREDICTED: similar to cytochrome c oxidase assembly protein COX11 [...	285.0	[0..3]	[182..158]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNLPKQPRI KSNRRLISLL VLGCLAMFAF GFALVPLYDV LCEKLGINGK TSNTASSYQA  60
   61 ITVDKNRVVT VEFISQIQTG MPWKFEPQTK RLEVHPGELI HTAFLAQNLS NRPIVGQAIP 120
  121 SVSPGQGAAY FNKTECFCFN QQHLAAASRA ELPLIFFVDP QLPESIHTLT LSYTLYDITD 180
  181 KQLASAIEQG AAK

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Detection Method:	PSI-BLAST
Confidence:	61.30103
Match:	1so9A
Description:	Solution Structure of apoCox11, 30 structures
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.26238051646126	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: