YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376132, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376132, gi|....

Description	E-value	Query Range	Subject Range
gi\|78507824, gi\|... - gi\|78684492\|ref\|ZP_00849276.1\| transglycosylase SLT domain protein [Shewanella sp. ANA-3], gi\|785078...	185.0	[0..1]	[239..1]
gi\|30019806, gi\|... - gi\|30019806\|ref\|NP_831437.1\| soluble lytic murein transglycosylase [Bacillus cereus ATCC 14579], gi\|...	182.0	[0..7]	[230..16]
gi\|113886841, gi... - gi\|82496203\|ref\|ZP_00881773.1\| transglycosylase SLT domain protein [Shewanella sp. MR-4], gi\|8240577...	182.0	[0..13]	[239..13]
gi\|114049407, gi... - gi\|78689917\|ref\|ZP_00854572.1\| transglycosylase SLT domain protein [Shewanella sp. MR-7], gi\|7851069...	181.0	[0..1]	[239..1]
gi\|2634555, gi\|1... - gi\|2634555\|emb\|CAB14053.1\| yomI [Bacillus subtilis subsp. subtilis str. 168], gi\|16079194\|ref\|NP_390... gi\|81342088 - gi\|81342088\|sp\|O31976.1\|YOMI_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized transglycosy... TMP_BPSPB - Probable tape measure protein OS=Bacillus phage SPbeta GN=yomI PE=3 SV=1	181.0	[0..107]	[231..1417]
gi\|218896695, gi... - gi\|218896695\|ref\|YP_002445106.1\| transglycosylase, SLT family [Bacillus cereus G9842], gi\|218540969\|... gi\|228859230, gi... - gi\|228900343\|ref\|ZP_04064572.1\| hypothetical protein bthur0014_15490 [Bacillus thuringiensis IBL 422... gi\|74489149, gi\|... - gi\|75763358\|ref\|ZP_00743096.1\| Lytic transglycosylase homolog yjbJ [Bacillus thuringiensis serovar i...	180.0	[0..7]	[230..25]
gi\|51977164, gi\|... - gi\|52143695\|ref\|YP_083131.1\| soluble lytic murein transglycosylase [Bacillus cereus E33L], gi\|519771...	180.0	[0..7]	[230..25]
gi\|228814336, gi... - gi\|228945364\|ref\|ZP_04107719.1\| hypothetical protein bthur0007_15270 [Bacillus thuringiensis serovar... gi\|49480935, gi\|... - gi\|49480935\|ref\|YP_035880.1\| soluble lytic murein transglycosylase [Bacillus thuringiensis serovar k...	179.0	[0..7]	[230..25]
gi\|254741024 - gi\|254741024\|ref\|ZP_05198712.1\| transglycosylase, SLT family protein [Bacillus anthracis str. Kruger... gi\|254755267 - gi\|254755267\|ref\|ZP_05207301.1\| transglycosylase, SLT family protein [Bacillus anthracis str. Vollum... gi\|254759803 - gi\|254759803\|ref\|ZP_05211827.1\| transglycosylase, SLT family protein [Bacillus anthracis str. Austra... gi\|47502145, gi\|... - gi\|47526997\|ref\|YP_018346.1\| Slt family transglycosylase [Bacillus anthracis str. 'Ames Ancestor'], ... gi\|30261767, gi\|... - gi\|30261767\|ref\|NP_844144.1\| Slt family transglycosylase [Bacillus anthracis str. Ames], gi\|30255995... gi\|65319041, gi\|... - gi\|65319041\|ref\|ZP_00392000.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory... gi\|190562508, gi... - gi\|190566373\|ref\|ZP_03019291.1\| transglycosylase, SLT family [Bacillus anthracis Tsiankovskii-I], gi... gi\|177650623, gi... - gi\|177650623\|ref\|ZP_02933590.1\| transglycosylase, SLT family [Bacillus anthracis str. A0174], gi\|172... gi\|165869384, gi... - gi\|165869384\|ref\|ZP_02214043.1\| transglycosylase, SLT family [Bacillus anthracis str. A0488], gi\|164... gi\|49184598, gi\|... - gi\|49184598\|ref\|YP_027850.1\| Slt family transglycosylase [Bacillus anthracis str. Sterne], gi\|491785... gi\|167638831, gi... - gi\|167638831\|ref\|ZP_02397106.1\| transglycosylase, SLT family [Bacillus anthracis str. A0193], gi\|167... gi\|227815467, gi... - gi\|227815467\|ref\|YP_002815476.1\| transglycosylase, SLT family [Bacillus anthracis str. CDC 684], gi\|... gi\|167531466, gi... - gi\|167633428\|ref\|ZP_02391753.1\| transglycosylase, SLT family [Bacillus anthracis str. A0442], gi\|167... gi\|229266074, gi... - gi\|229601666\|ref\|YP_002866156.1\| transglycosylase, SLT family [Bacillus anthracis str. A0248], gi\|22... gi\|170128521, gi... - gi\|170706423\|ref\|ZP_02896883.1\| transglycosylase, SLT family [Bacillus anthracis str. A0389], gi\|170... gi\|254683262 - gi\|254683262\|ref\|ZP_05147123.1\| transglycosylase, SLT family protein [Bacillus anthracis str. CNEVA-... gi\|170669871, gi... - gi\|170686174\|ref\|ZP_02877396.1\| transglycosylase, SLT family [Bacillus anthracis str. A0465], gi\|170... gi\|254734615 - gi\|254734615\|ref\|ZP_05192327.1\| transglycosylase, SLT family protein [Bacillus anthracis str. Wester...	179.0	[0..7]	[230..25]
gi\|47565430, gi\|... - gi\|47565430\|ref\|ZP_00236471.1\| transglycosylase SLT domain protein [Bacillus cereus G9241], gi\|47557...	178.0	[0..7]	[230..25]

Back

Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAAHQPPIY LKSIALLWLG LLLAWGSLAT VFAEEAKPKP RIVARYSDTG IMSSEGQEKF  60
   61 KVYQYQQANG VTVFTDKAPT STDYQILLYE CFACRPDSDI DWNGIRLFTR NYDSLISRAA 120
  121 DKHQLDPALI RAVIHAESAF NARAVSRAGA MGLMQLMPET AKDMGVTNAF LPEENILGGS 180
  181 KYLAQMLKQF NGDIALACAA YNAGPTTVTQ YNGIPPYPET QAYVERVQIL LKRYRDTKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	1qsaA
Description:	70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
penicillin binding	2.64957480679626	bayes_pls_golite062009
catalytic activity	1.95328415115451	bayes_pls_golite062009
lysozyme activity	1.83799209924951	bayes_pls_golite062009
drug binding	1.54697929389118	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
hydrolase activity	0.677491712259	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.45061419828567	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: