YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376148, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	424 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376148, gi|....

Description	E-value	Query Range	Subject Range
gi\|18762509 - gi\|18762509\|gb\|AAL78077.1\| 3-deoxy-manno-octulosonic acid transferase [Yersinia enterocolitica]	272.0	[0..1]	[423..1]
gi\|253979618, gi... - gi\|254290311\|ref\|YP_003056059.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli BL21... gi\|242379157, gi... - gi\|251786884\|ref\|YP_003001188.1\| hypothetical protein B21_03442 [Escherichia coli BL21], gi\|24237915... gi\|254163561, gi... - gi\|254163561\|ref\|YP_003046669.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli B st... gi\|194435685, gi... - gi\|83588520\|ref\|ZP_00927144.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|224613060 - gi\|224613060\|dbj\|BAH24280.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli B] gi\|218707267, gi... - gi\|218707267\|ref\|YP_002414786.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli UMN0... gi\|170682133, gi... - gi\|170682133\|ref\|YP_001745933.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli SMS-...	271.0	[0..1]	[423..1]
gi\|187730590, gi... - gi\|75179734\|ref\|ZP_00699721.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Shigella boydi...	271.0	[0..1]	[423..1]
gi\|73671330\|gb\|A... - KdtA variant [Escherichia coli] gi\|227839079, gi... - gi\|227883801\|ref\|ZP_04001606.1\| KDO transferase (inner core) [Escherichia coli 83972], gi\|227839079\|... EG10520 - 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) / 3-deoxy-D-manno-octulosonate(Kdo)-l... KDTA_ECOL6 - 3-deoxy-D-manno-octulosonic acid transferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|238902724, gi... - gi\|238902724\|ref\|YP_002928520.1\| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) [Esc... KDTA_ECO57 - 3-deoxy-D-manno-octulosonic acid transferase OS=Escherichia coli O157:H7 GN=waaA PE=3 SV=1 gi\|254594988, gi... - gi\|254795588\|ref\|YP_003080425.1\| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) [Esc... EG10520 - 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) / 3-deoxy-D-manno-octulosonate(Kdo)-l... gi\|73857610, gi\|... - gi\|74314133\|ref\|YP_312552.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Shigella sonnei Ss046], g... gi\|85676409, gi\|... - gi\|89110378\|ref\|AP_004158.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli str. K-1... gi\|193063781, gi... - gi\|75258173\|ref\|ZP_00729621.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|188494255, gi... - gi\|75514305\|ref\|ZP_00736613.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|83571419, gi\|... - gi\|83571419\|ref\|ZP_00922859.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Shigella dysen... gi\|157157302, gi... - gi\|75188391\|ref\|ZP_00701658.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|75229024, gi\|... - gi\|75229024\|ref\|ZP_00715608.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|193070364, gi... - gi\|75234791\|ref\|ZP_00719094.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|124499138, gi... - gi\|124530497\|ref\|ZP_01701124.1\| Three-deoxy-D-manno-octulosonic-acid transferase domain protein [Esc... gi\|157163114, gi... - gi\|75197535\|ref\|ZP_00707605.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|75208026, gi\|... - gi\|75208026\|ref\|ZP_00708438.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|169753065, gi... - gi\|170018137\|ref\|YP_001723091.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli ATCC... KDTA_ECOLI - 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) (KDO transferase) - Escherichia coli gi\|170083141, gi... - gi\|170083141\|ref\|YP_001732461.1\| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) [Esc... gi\|195936194 - gi\|195936194\|ref\|ZP_03081576.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:... gi\|208726100, gi... - gi\|208806299\|ref\|ZP_03248636.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:... gi\|208813194, gi... - gi\|208813194\|ref\|ZP_03254523.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:... gi\|208820283, gi... - gi\|208820283\|ref\|ZP_03260603.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:... gi\|209162097, gi... - gi\|209400697\|ref\|YP_002273111.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157... gi\|209921104, gi... - gi\|209921104\|ref\|YP_002295188.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli SE11... gi\|188016967, gi... - gi\|188016967\|gb\|EDU55089.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 s... gi\|168753457, gi... - gi\|189358799\|gb\|EDU77218.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 s... gi\|189369933, gi... - gi\|189369933\|gb\|EDU88349.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 s... gi\|189364650, gi... - gi\|189364650\|gb\|EDU83069.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 s... gi\|168772401, gi... - gi\|187771725\|gb\|EDU35569.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 s... KDTA_ECOL6 - 3-deoxy-D-manno-octulosonic-acid transferase OS=Escherichia coli O6 GN=waaA PE=3 SV=1 gi\|189002330, gi... - gi\|189002330\|gb\|EDU71316.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 s... gi\|168785509, gi... - gi\|189374496\|gb\|EDU92912.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 s... gi\|215266984, gi... - gi\|215488912\|ref\|YP_002331343.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O127... gi\|13363983, gi\|... - gi\|15833762\|ref\|NP_312535.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 ... gi\|217325918, gi... - gi\|217325918\|ref\|ZP_03442002.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:... gi\|110345466, gi... - gi\|110643874\|ref\|YP_671604.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli 536], g... gi\|218362963, gi... - gi\|218556195\|ref\|YP_002389108.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli IAI1...	271.0	[0..1]	[423..1]
gi\|82779123, gi\|... - gi\|82779123\|ref\|YP_405472.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Shigella dysenteriae Sd19...	271.0	[0..1]	[423..1]
gi\|191170309, gi... - gi\|75242588\|ref\|ZP_00726332.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co...	271.0	[0..1]	[423..1]
gi\|218429481, gi... - gi\|218691917\|ref\|YP_002400129.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli ED1a... gi\|81247407, gi\|... - gi\|82545996\|ref\|YP_409943.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Shigella boydii Sb227], g...	270.0	[0..1]	[423..1]
gi\|29144074, gi\|... - gi\|29144074\|ref\|NP_807416.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica subsp... gi\|16762585 - gi\|16762585\|ref\|NP_458202.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica subsp... gi\|16504890, gi\|... - gi\|25344937\|pir\|\|AI0971 3-deoxy-D-manno-octulosonic-acid transferase [imported] - Salmonella enteric... gi\|213855124 - gi\|213855124\|ref\|ZP_03383364.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su... gi\|213028554 - gi\|213028554\|ref\|ZP_03343001.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su... gi\|213161286 - gi\|213161286\|ref\|ZP_03346996.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su... gi\|213425234 - gi\|213425234\|ref\|ZP_03357984.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su... gi\|213647922 - gi\|213647922\|ref\|ZP_03377975.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su...	270.0	[0..1]	[423..1]
gi\|3821845 - gi\|3821845\|gb\|AAC69680.1\| Kdo transferase WaaA [Escherichia coli]	270.0	[0..1]	[421..1]
gi\|115515032, gi... - gi\|117625908\|ref\|YP_859231.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli APEC O1... gi\|91074723, gi\|... - gi\|91213149\|ref\|YP_543135.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli UTI89], ... gi\|237703403, gi... - gi\|237703403\|ref\|ZP_04533884.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia sp. 3_2_53... gi\|218560705, gi... - gi\|218560705\|ref\|YP_002393618.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli S88]...	270.0	[0..1]	[423..1]

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Predicted Domain #1

Region A:
Residues: [1-424]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRFFYSALL YLLSPLLLAY LAFRAIKSPD YRGRWGERFG LAQLKPTDLL IHSVSMGETL  60
   61 AAIPLIRLIM QMHPELSITV TTTSPTGSAE VRKAFGDQVQ HCYLPFDLPW CVSRFLRQLS 120
  121 PKWCIIMETE LWPNLVELAA KRGVRLMLAN ARLSAKSAAQ YAKRSQLSRP MLQRLDVIAV 180
  181 QTQAEAQRFI DLGVAADRVT VCGSLKFDLS ITPDRLTLAR ELRQTWGKET APVWVAGSVH 240
  241 PGEFDAMLSA HKRLLAKWPE ALLIIAPRHP EQFAAVADVV ARQGFEYVRR SDAQAITATT 300
  301 QVLVGDTMGE LLTFYGAADQ AFVGGTLIEN GGHNPLEPVA MGVPVMVGPN HWDFAQITQM 360
  361 LADAGGLRIV SSGQELAENL IQYFKQPVLC QQAAKAGLAV VEANRGALQR QFALAELLLT 420
  421 RQTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.045757
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits