YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351191, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351191, gi|....

Description	E-value	Query Range	Subject Range
gi\|68541032, gi\|... - gi\|68541032\|ref\|ZP_00580779.1\| Glycosyl transferase, family 9 [Shewanella baltica OS155], gi\|6852117...	300.0	[0..1]	[346..1]
gi\|52426017, gi\|... - gi\|52426017\|ref\|YP_089154.1\| RfaF protein [Mannheimia succiniciproducens MBEL55E], gi\|52308069\|gb\|AA...	300.0	[0..1]	[341..1]
gi\|160863099, gi... - gi\|160877577\|ref\|YP_001556893.1\| glycosyl transferase family protein [Shewanella baltica OS195], gi\|...	299.0	[0..1]	[347..1]
gi\|48868563, gi\|... - gi\|68248868\|ref\|YP_247980.1\| ADP-heptose--lipooligosaccharide heptosyltransferase I [Haemophilus inf...	299.0	[0..1]	[341..1]
gi\|53733169 - gi\|53733169\|ref\|ZP_00156098.2\| COG0859: ADP-heptose:LPS heptosyltransferase [Haemophilus influenzae ...	298.0	[0..1]	[341..3]
gi\|53732918 - gi\|53732918\|ref\|ZP_00155269.2\| COG0859: ADP-heptose:LPS heptosyltransferase [Haemophilus influenzae ...	298.0	[0..1]	[341..3]
gi\|145566668, gi... - gi\|77816027\|ref\|ZP_00815237.1\| Glycosyl transferase, family 9 [Shewanella putrefaciens CN-32], gi\|77...	298.0	[0..1]	[345..1]
Y261_HAEIN - Putative glycosyltransferase HI_0261 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20... Y261_HAEIN - Putative glycosyltransferase HI_0261 OS=Haemophilus influenzae GN=opsX PE=3 SV=1	296.0	[0..1]	[341..1]
gi\|114049472, gi... - gi\|78691186\|ref\|ZP_00855813.1\| heptosyl transferase, glycosyltransferase family 9 protein [Shewanell...	296.0	[0..8]	[347..1]
gi\|78684550, gi\|... - gi\|78684550\|ref\|ZP_00849334.1\| heptosyl transferase, glycosyltransferase family 9 protein [Shewanell...	296.0	[0..8]	[347..1]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDINTMNS LCLLRLSAIG DVCHAVAMVQ AIQRQYPHLT ITWVIGKLEY QLLKHLPGIE  60
   61 FVIFDKSQGW RSYFYLHKAL KGRRFDVLLH MQVALRATLA SLAISAKVRV GFDRTRAKEG 120
  121 QWLVTNYRVE PLAQPHVLDG FMGFAKAIGV SDLTPQWNIP VPKADTEFAQ SHIAEGEKVL 180
  181 IICAAASKAE RNWLPKRYVA VAQHAINKGY RVILCGGPTA LEKALAEQIL QACPAKLDNL 240
  241 VGKTSLTQLL ALLKRASLVL APDTGPAHMA VTQGTPVIGL YAHSNPGRTG PYLSQQYVVS 300
  301 AYQEAIASQQ SGEVKWGTRA KGADLMALIS VEAVIDKFDQ VIQQTHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1pswA
Description:	ADP-heptose LPS heptosyltransferase II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
lipopolysaccharide heptosyltransferase activity	3.44180421678517	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	3.04530122157712	bayes_pls_golite062009
catalytic activity	3.02192459767177	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.94500176353224	bayes_pls_golite062009
glycogen phosphorylase activity	2.09116455393465	bayes_pls_golite062009
glucosyltransferase activity	1.8062586862583	bayes_pls_golite062009
transferase activity	1.67770954408305	bayes_pls_golite062009
UDP-N-acetylglucosamine 2-epimerase activity	1.63103907245982	bayes_pls_golite062009
UDP-glucosyltransferase activity	1.4199532885636	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.30934991061674	bayes_pls_golite062009
glycogen (starch) synthase activity	0.435616523537281	bayes_pls_golite062009
phosphorylase activity	0.431662083250969	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.27693350081385	bayes_pls_golite062009
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	0.22009679964126	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: