YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPG_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPG_SHEON.

Description	E-value	Query Range	Subject Range
ATPG_SHESA - ATP synthase gamma chain OS=Shewanella sp. (strain ANA-3) GN=atpG PE=3 SV=1	388.0	[0..1]	[286..1]
ATPG_SHEAM - ATP synthase gamma chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpG PE=3 SV=1	388.0	[0..1]	[286..1]
ATPG_SHESR - ATP synthase gamma chain OS=Shewanella sp. (strain MR-7) GN=atpG PE=3 SV=1 ATPG_SHESM - ATP synthase gamma chain OS=Shewanella sp. (strain MR-4) GN=atpG PE=3 SV=1	387.0	[0..1]	[286..1]
gi\|148138 - gi\|148138\|gb\|AAA24736.1\| ATP synthase gamma subunit [Escherichia coli]	385.0	[0..1]	[286..1]
ATPG_SHEB8 - ATP synthase gamma chain OS=Shewanella baltica (strain OS185) GN=atpG PE=3 SV=1 ATPG_SHEB2 - ATP synthase gamma chain OS=Shewanella baltica (strain OS223) GN=atpG PE=3 SV=1 ATPG_SHEB9 - ATP synthase gamma chain OS=Shewanella baltica (strain OS195) GN=atpG PE=3 SV=1 ATPG_SHEB5 - ATP synthase gamma chain OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=atpG PE=3 SV=1	385.0	[0..1]	[286..1]
gi\|194420428, gi... - gi\|83571335\|ref\|ZP_00922775.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Shigella dysenteriae ... gi\|194435837, gi... - gi\|83588402\|ref\|ZP_00927026.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli 101-... ATPG_SHIB3 - ATP synthase gamma chain OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=atpG PE=3 SV... ATPG_ECOHS - ATP synthase gamma chain OS=Escherichia coli O9:H4 (strain HS) GN=atpG PE=3 SV=1 gi\|75210657, gi\|... - gi\|75210657\|ref\|ZP_00710798.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli B171... gi\|190904116, gi... - gi\|75230994\|ref\|ZP_00717429.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli B7A]... gi\|192957494, gi... - gi\|75236465\|ref\|ZP_00720561.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli E110... gi\|191170529, gi... - gi\|75242479\|ref\|ZP_00726223.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli F11]... ATPG_SHIFL - ATP synthase gamma chain OS=Shigella flexneri GN=atpG PE=3 SV=1 gi\|24054295, gi\|... - gi\|24115036\|ref\|NP_709546.1\| F0F1 ATP synthase subunit gamma [Shigella flexneri 2a str. 301], gi\|240... ATPG_ECOL6 - ATP synthase gamma chain OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=atpG PE=3... gi\|30064962, gi\|... - gi\|30064962\|ref\|NP_839133.1\| F0F1 ATP synthase subunit gamma [Shigella flexneri 2a str. 2457T], gi\|3... ATPG_ECO57 - ATP synthase gamma chain OS=Escherichia coli O157:H7 GN=atpG PE=3 SV=1 EG10104 - F1 sector of membrane-bound ATP synthase, gamma subunit / ATP synthase subunit gamma, membrane-bound... gi\|15804333, gi\|... - gi\|15804333\|ref\|NP_290372.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 EDL933], gi\|1... ATPG_ESCF3 - ATP synthase gamma chain OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=... ATPG_ECO8A - ATP synthase gamma chain OS=Escherichia coli O8 (strain IAI1) GN=atpG PE=3 SV=1 ATPG_ECO45 - ATP synthase gamma chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=atpG PE=3 SV=1 ATPG_ECO81 - ATP synthase gamma chain OS=Escherichia coli O81 (strain ED1a) GN=atpG PE=3 SV=1 sp\|B7UMJ8\|ATPG_ECO27 - ATP synthase gamma chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpG PE=3 SV=1 ATPG_ECO7I - ATP synthase gamma chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=atpG PE=3 SV=1 ATPG_ECOLU - ATP synthase gamma chain OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=atpG PE=3 SV=1 gi\|195936360 - gi\|195936360\|ref\|ZP_03081742.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 str. EC402... gi\|208727153, gi... - gi\|208807352\|ref\|ZP_03249689.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4206... gi\|208812722, gi... - gi\|208812722\|ref\|ZP_03254051.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4045... gi\|208741481, gi... - gi\|208821358\|ref\|ZP_03261678.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4042... ATPG_ECO5E - ATP synthase gamma chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=atpG PE=3 SV=1 gi\|254795739, gi... - gi\|254795739\|ref\|YP_003080576.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichi... ATPG_ECOSE - ATP synthase gamma chain OS=Escherichia coli (strain SE11) GN=atpG PE=3 SV=1 gi\|254163685, gi... - gi\|254163685\|ref\|YP_003046793.1\| F0F1 ATP synthase subunit gamma [Escherichia coli B str. REL606], g... ATPG_ECO27 - ATP synthase gamma chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpG PE=3 SV=1 gi\|254038952, gi... - gi\|254038952\|ref\|ZP_04873004.1\| ATP synthase F1 [Escherichia sp. 1_1_43], gi\|226838917\|gb\|EEH70944.1... gi\|217322161, gi... - gi\|217325940\|ref\|ZP_03442024.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. TW1458... gi\|253326676, gi... - gi\|254290435\|ref\|YP_003056183.1\| F0F1 ATP synthase subunit gamma [Escherichia coli BL21(DE3)], gi\|25... gi\|251786998, gi... - gi\|251786998\|ref\|YP_003001302.1\| hypothetical protein B21_03561 [Escherichia coli BL21], gi\|24237927... ATPG_ECOBW - ATP synthase gamma chain OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=atpG PE=3 SV=1 gi\|226902798, gi... - gi\|237703534\|ref\|ZP_04534015.1\| membrane-bound ATP synthase F1 sector gamma-subunit [Escherichia sp.... gi\|227839233, gi... - gi\|227883955\|ref\|ZP_04001760.1\| F0F1 ATP synthase subunit gamma [Escherichia coli 83972], gi\|2278392... EG10104 - F1 sector of membrane-bound ATP synthase, gamma subunit / ATP synthase subunit gamma, membrane-bound... ATPG_ECOL6 - ATP synthase gamma chain OS=Escherichia coli O6 GN=atpG PE=3 SV=1 ATPG_ECOLI - ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1 sector gamma subunit) - Escherichia coli gi\|189369484, gi... - gi\|189369484\|gb\|EDU87900.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4501], g... gi\|168766233, gi... - gi\|189364469\|gb\|EDU82888.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4486], g... ATPG_ECOUT - ATP synthase gamma chain OS=Escherichia coli (strain UTI89 / UPEC) GN=atpG PE=3 SV=1 gi\|187771442, gi... - gi\|187771442\|gb\|EDU35286.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4196], g... gi\|15833929, gi\|... - gi\|15833929\|ref\|NP_312702.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 str. Sakai], ... gi\|168779968, gi... - gi\|189002320\|gb\|EDU71306.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4076], g... gi\|168786576, gi... - gi\|189373262\|gb\|EDU91678.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC869], gi... gi\|168798781, gi... - gi\|189378702\|gb\|EDU97118.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC508], gi... ATPG_ECODH - ATP synthase gamma chain OS=Escherichia coli (strain K12 / DH10B) GN=atpG PE=3 SV=1 ATPG_ECOSM - ATP synthase gamma chain OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=atpG PE=3 SV=1 ATPG_ECOL5 - ATP synthase gamma chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=atpG PE=3 SV=1 ATPG_SHIF8 - ATP synthase gamma chain OS=Shigella flexneri serotype 5b (strain 8401) GN=atpG PE=3 SV=1 ATPG_ECOK1 - ATP synthase gamma chain OS=Escherichia coli O1:K1 / APEC GN=atpG PE=3 SV=1 gi\|124530053, gi... - gi\|124530053\|ref\|ZP_01700836.1\| ATP synthase F1, gamma subunit [Escherichia coli B], gi\|124499458\|gb... gi\|168748537, gi... - gi\|188016989\|gb\|EDU55111.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4113], g... gi\|168753635, gi... - gi\|189359205\|gb\|EDU77624.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4401], g... ATPG_ECOLC - ATP synthase gamma chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=atpG PE=3 SV=... gi\|192930532, gi... - gi\|75258272\|ref\|ZP_00729720.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli E22]... gi\|188493986, gi... - gi\|75514201\|ref\|ZP_00736509.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli 5363... ATPG_SHIDS - ATP synthase gamma chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpG PE=3 SV=1 gi\|85676305, gi\|... - gi\|89110274\|ref\|AP_004054.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichia co...	385.0	[0..1]	[286..1]
ATPG_ECO24 - ATP synthase gamma chain OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=atpG PE=3 SV=1 gi\|170766612, gi... - gi\|170766612\|ref\|ZP_02901065.1\| ATP synthase F1, gamma subunit [Escherichia albertii TW07627], gi\|17... ATPG_ECO55 - ATP synthase gamma chain OS=Escherichia coli (strain 55989 / EAEC) GN=atpG PE=3 SV=1	384.0	[0..1]	[286..1]
gi\|6625702 - gi\|6625702\|gb\|AAF19361.1\|AF188265_7 ATP synthase subunit gamma [Salmonella typhimurium] gi\|6625702\|gb\|AA... - ATP synthase subunit gamma [Salmonella typhimurium]	384.0	[0..1]	[286..1]
ATPG_SHEFN - ATP synthase gamma chain OS=Shewanella frigidimarina (strain NCIMB 400) GN=atpG PE=3 SV=1	384.0	[0..1]	[286..1]
ATPG_SHELP - ATP synthase gamma chain OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=atpG PE=3 SV=1	383.0	[0..1]	[286..1]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAKEIKTK IASVKNTQKI TSAMEMVAAS KMRRAQERMA ASRPYAESMR KVIGHVAQGS  60
   61 LEYKHPYLEV REAKRVGYIV VATDRGLCGG LNVNLFKKVV ADVKSWKEQG AEFEFCPIGA 120
  121 RSVQFFKSFG GQVSAQASGL GDAPKLNDLI GTVQVMLEAY NEGKLDRLYV VFNKFVNTMT 180
  181 QTPVIEQLLP LPKSEDDEVA HRWDYIYEPD PKALLDTLLV RYVESQVYQG VVENIASEQA 240
  241 ARMVAMKAAT DNAGTLIDDL QLVYNKARQA AITQELSEIV SGASAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.0
Match:	1fs0G
Description:	ATP synthase (F1-ATPase), gamma subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	15.1137831131288	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	13.4145652211868	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.6641947022993	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.5487930833633	bayes_pls_golite062009
cation transmembrane transporter activity	6.80604482262055	bayes_pls_golite062009
ion transmembrane transporter activity	6.69705984340533	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	6.26502594800359	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	5.63110240369142	bayes_pls_golite062009
transporter activity	4.45226670606147	bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism	4.41868118040901	bayes_pls_golite062009
substrate-specific transporter activity	4.39356148903647	bayes_pls_golite062009
transmembrane transporter activity	4.37099130240158	bayes_pls_golite062009
cation-transporting ATPase activity	3.59230188331019	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.90203817584499	bayes_pls_golite062009
binding	1.15817227356277	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.06444952929525	bayes_pls_golite062009
pyrophosphatase activity	0.999037106125156	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.982260922227037	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.979897673854905	bayes_pls_golite062009
ATPase activity	0.97716527277771	bayes_pls_golite062009
primary active transmembrane transporter activity	0.832120661263195	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.826276552217418	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.799415003044834	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.796014711689645	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.795885962810984	bayes_pls_golite062009
active transmembrane transporter activity	0.786890420776467	bayes_pls_golite062009
protein binding	0.556386379655548	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	0.549067982072581	bayes_pls_golite062009
ATPase activity, coupled	0.330850590075407	bayes_pls_golite062009
hydrolase activity	0.136524426848017	bayes_pls_golite062009
catalytic activity	0.0130900138976991	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: