YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|24376234, gi|...
Organism: Shewanella oneidensis MR-1
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|24376234, gi|....

Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLMTGLIK VDNITRSGLT IYDRIRTGDQ QFWLTSEELS AVLNLRLKGT SFYGLAIRTR  60
   61 SKVAKELVCN ALGYKVPSSF VKCQPRFSGQ MFDTYVQKSN NLQVWNEELD VERRYVIIRT 120
  121 DENDIITQVK VIAGSDLAVL DTTGTLTQKF QARLTLSDQK MELISHFDTL NIQKILAPIS 180
  181 LNLEIDSPVS QPQNGKLLPI GECFRRLSKI VGCSFTDAG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [220-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTQERNRGAA LHALVCKALG YTDYRDNGQF PDIKHQLLEV KLQTSPTIDL GLVCPNSQAN  60
   61 LDIEQLGLQQ IRHCDVRYAI FYGYIVNGLV HITNLYLTTG EDFFNRFEQF GGKVLNKKIQ 120
  121 IPLPRDFFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.767 a.1.1 Globin-like
View Download 0.748 a.1.1 Globin-like
View Download 0.748 a.1.1 Globin-like
View Download 0.735 a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.696 a.1.1 Globin-like
View Download 0.690 a.1.1 Globin-like
View Download 0.689 a.1.1 Globin-like
View Download 0.688 a.1.1 Globin-like
View Download 0.660 a.1.1 Globin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle