YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345285, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345285, gi|....

Description	E-value	Query Range	Subject Range
gi\|77995475, gi\|... - gi\|78043360\|ref\|YP_359772.1\| putative lactaldehyde reductase [Carboxydothermus hydrogenoformans Z-29...	404.0	[0..3]	[383..4]
gi\|98660195 - gi\|98660195\|dbj\|GAA02506.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	391.0	[0..5]	[383..50]
gi\|254228886, gi... - gi\|75856694\|ref\|ZP_00764318.1\| COG1454: Alcohol dehydrogenase, class IV [Vibrio sp. Ex25], gi\|254228...	388.0	[0..1]	[383..1]
gi\|90311944, gi\|... - gi\|90406902\|ref\|ZP_01215093.1\| putative alcohol dehydrogenase [Psychromonas sp. CNPT3], gi\|90311944\|...	387.0	[0..1]	[383..1]
gi\|52307909, gi\|... - gi\|52425857\|ref\|YP_088994.1\| EutG protein [Mannheimia succiniciproducens MBEL55E], gi\|52307909\|gb\|AA...	386.0	[0..1]	[382..6]
gi\|18309431, gi\|... - gi\|18309431\|ref\|NP_561365.1\| alcohol dehydrogenase [Clostridium perfringens str. 13], gi\|18144107\|db...	386.0	[0..1]	[383..1]
gi\|110803754, gi... - gi\|110803754\|ref\|YP_697771.1\| alcohol dehydrogenase 2 [Clostridium perfringens SM101], gi\|110684255\|...	386.0	[0..1]	[383..1]
gi\|114845300, gi... - gi\|167039286\|ref\|YP_001662271.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Thermoanaeroba...	385.0	[0..5]	[382..470]
gi\|110799824, gi... - gi\|110799824\|ref\|YP_694908.1\| alcohol dehydrogenase, iron-containing [Clostridium perfringens ATCC 1...	385.0	[0..1]	[383..1]
gi\|241903602, gi... - gi\|241903602\|ref\|ZP_04788323.1\| iron-containing alcohol dehydrogenase [Thermoanaerobacter brockii su... gi\|76588428, gi\|... - gi\|76796158\|ref\|ZP_00778525.1\| Iron-containing alcohol dehydrogenase [Thermoanaerobacter ethanolicus...	385.0	[0..5]	[382..470]

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Predicted Domain #1

Region A:
Residues: [1-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTFYMPPM SLMGQHAIKL LGTELQARNF NKALIVTDKA LVDIKLVDKL TDELSAHDIA  60
   61 FAIFDGVKPN PTEKNIVQGL ALLEAQKCDF VISFGGGSSH DCAKGIALVA ANGGHIRDYS 120
  121 KGVHLSAKPQ LPLVTVNTTA GTAAEMTIFA IVTNEEDETK YPIVDKNLTP IIAVNDSELM 180
  181 VAMPKFLTAA TGMDALTHAV EAYVSTAATP ITDASAIKAI ELIAQNLKAA VDNGEDREAR 240
  241 EAMQYGEYLA GMAFSNASLG YVHSMAHQLG GVYDLVHGLC NAILLPVVSR FNSAEKVERF 300
  301 AEVAKAMGVD TVGMTLIDAA ESGILAIEKL SASVGTDQKL SDLGVKEDKL EFMAINALND 360
  361 ACSLTNPRKA TTEDIINIFK KAM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.045757
Match:	1rrmA
Description:	Crystal Structure of Lactaldehyde reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxyacid-oxoacid transhydrogenase activity	8.51876704052427	bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity	4.00011629375661	bayes_pls_golite062009
oxidoreductase activity	3.07409531087588	bayes_pls_golite062009
alcohol dehydrogenase activity, metal ion-independent	3.05722501802075	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	2.83823088483915	bayes_pls_golite062009
catalytic activity	2.37357608468991	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.10085302216488	bayes_pls_golite062009
binding	1.15096180564234	bayes_pls_golite062009
3-chloroallyl aldehyde dehydrogenase activity	0.831155115586418	bayes_pls_golite062009
cation binding	0.319000821544479	bayes_pls_golite062009
metal ion binding	0.319000821544479	bayes_pls_golite062009
ion binding	0.313606245452103	bayes_pls_golite062009
protein binding	0.295023706645045	bayes_pls_golite062009
transition metal ion binding	0.259889634539407	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	0.0904828025133766	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: