YRC Public Data Repository - Protein Structure Prediction

Protein:	SPEH_CLOTE
Organism:	Clostridium tetani E88
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPEH_CLOTE.

Description	E-value	Query Range	Subject Range
SPEH_CALS8 - S-adenosylmethionine decarboxylase proenzyme OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43... SPEH_CALBD - S-adenosylmethionine decarboxylase proenzyme OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / ...	183.0	[0..1]	[123..1]
SPEH_CLOTH - S-adenosylmethionine decarboxylase proenzyme OS=Clostridium thermocellum (strain ATCC 27405 / DSM 12...	182.0	[0..1]	[123..1]
SPEH_THETN - S-adenosylmethionine decarboxylase proenzyme OS=Thermoanaerobacter tengcongensis GN=speH PE=3 SV=1 SPEH_CALS4 - S-adenosylmethionine decarboxylase proenzyme OS=Caldanaerobacter subterraneus subsp. tengcongensis (...	179.0	[0..1]	[124..1]
gi\|87124944, gi\|... - gi\|87124944\|ref\|ZP_01080791.1\| hypothetical protein RS9917_03043 [Synechococcus sp. RS9917], gi\|8616...	177.0	[0..2]	[124..32]
gi\|242256677, gi... - gi\|242256677\|ref\|ZP_04801564.1\| S-adenosylmethionine decarboxylase proenzyme [Thermoanaerobacter sp.... gi\|241884457, gi... - gi\|241903233\|ref\|ZP_04787960.1\| S-adenosylmethionine decarboxylase proenzyme [Thermoanaerobacter bro... SPEH_THEPX - S-adenosylmethionine decarboxylase proenzyme OS=Thermoanaerobacter sp. (strain X514) GN=speH PE=3 SV... SPEH_THEP3 - S-adenosylmethionine decarboxylase proenzyme OS=Thermoanaerobacter pseudethanolicus (strain ATCC 332...	177.0	[0..1]	[121..1]
SPEH_CARHZ - S-adenosylmethionine decarboxylase proenzyme OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-1...	175.0	[0..1]	[124..1]
gi\|88787905, gi\|... - gi\|88807866\|ref\|ZP_01123377.1\| S-adenosylmethionine decarboxylase proenzyme [Synechococcus sp. WH 78...	174.0	[0..2]	[125..32]
gi\|88945067, gi\|... - gi\|88945067\|ref\|ZP_01148287.1\| Adenosylmethionine decarboxylase [Desulfotomaculum reducens MI-1], gi...	174.0	[0..1]	[116..1]
gi\|116067101, gi... - gi\|116075786\|ref\|ZP_01473045.1\| S-adenosylmethionine decarboxylase proenzyme [Synechococcus sp. RS99...	174.0	[0..2]	[124..32]
SPEH_SYNWW - S-adenosylmethionine decarboxylase proenzyme OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245...	174.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLGRHILA EIYGCDELIL NDKEYIERIM VDSALKSGAE VREVAFHKFS PQGVSGVVII  60
   61 SESHLTIHTW PELGYAAVDV FTCGDRVNPW DACNYMGEKL NAKNITATEV KRGIFEQPVA 120
  121 VKASNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1vr7A
Description:	Crystal structure of S-adenosylmethionine decarboxylase proenzyme (TM0655) from THERMOTOGA MARITIMA at 1.2 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits