YRC Public Data Repository - Protein Structure Prediction

Protein:	FUR_VIBPA
Organism:	Vibrio parahaemolyticus RIMD 2210633
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUR_VIBPA.

Description	E-value	Query Range	Subject Range
gi\|88792643, gi\|... - gi\|90192401\|gb\|AAY28416.2\| ferric uptake regulator [Vibrio alginolyticus], gi\|88792643\|gb\|ABD52297.1... gi\|91225929, gi\|... - gi\|91225929\|ref\|ZP_01260898.1\| ferric uptake regulator [Vibrio alginolyticus 12G01], gi\|91189579\|gb\|...	177.0	[0..1]	[149..1]
gi\|37197941, gi\|... - gi\|37679198\|ref\|NP_933807.1\| ferric uptake regulator [Vibrio vulnificus YJ016], gi\|37197941\|dbj\|BAC9...	176.0	[0..1]	[148..19]
FUR_VIBAN - Ferric uptake regulation protein OS=Vibrio anguillarum GN=fur PE=1 SV=1 FUR_VIBA7 - Ferric uptake regulation protein OS=Vibrio anguillarum (strain ATCC 68554 / 775) GN=fur PE=1 SV=1	176.0	[0..1]	[149..1]
gi\|229355312, gi... - gi\|229507807\|ref\|ZP_04397312.1\| ferric uptake regulation protein FUR [Vibrio cholerae BX 330286], gi... gi\|227082231, gi... - gi\|227082231\|ref\|YP_002810782.1\| ferric uptake regulation protein [Vibrio cholerae M66-2], gi\|227010... gi\|229513759, gi... - gi\|229513759\|ref\|ZP_04403221.1\| ferric uptake regulation protein FUR [Vibrio cholerae TMA 21], gi\|22... gi\|229351921, gi... - gi\|229511956\|ref\|ZP_04401435.1\| ferric uptake regulation protein FUR [Vibrio cholerae B33], gi\|22935... FUR_VIBCH - Ferric uptake regulation protein OS=Vibrio cholerae GN=fur PE=1 SV=1 gi\|229340986, gi... - gi\|229522061\|ref\|ZP_04411478.1\| ferric uptake regulation protein FUR [Vibrio cholerae TM 11079-80], ... gi\|229519092, gi... - gi\|229519092\|ref\|ZP_04408535.1\| ferric uptake regulation protein FUR [Vibrio cholerae RC9], gi\|22934... gi\|254849191, gi... - gi\|254849191\|ref\|ZP_05238541.1\| ferric uptake regulation protein [Vibrio cholerae MO10], gi\|25484489... gi\|229370007, gi... - gi\|229607352\|ref\|YP_002878000.1\| ferric uptake regulation protein FUR [Vibrio cholerae MJ-1236], gi\|... FUR_VIBCH - Ferric uptake regulation protein OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N1... gi\|150422675, gi... - gi\|254291345\|ref\|ZP_04962138.1\| ferric uptake regulation protein [Vibrio cholerae AM-19226], gi\|1977... gi\|153831230, gi... - gi\|153831230\|ref\|ZP_01983897.1\| ferric uptake regulation protein [Vibrio cholerae 623-39], gi\|148873...	175.0	[0..1]	[149..1]
tr\|A0A085TPC6\|A0... - Ferric uptake regulation protein OS=Vibrio cholerae GN=fur PE=4 SV=1 gi\|49387485 - gi\|49387485\|dbj\|BAD24855.1\| ferric uptake regulator [Vibrio mimicus]	174.0	[0..1]	[149..1]
FUR_VIBC3 - Ferric uptake regulation protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa... gi\|121727219, gi... - gi\|75816912\|ref\|ZP_00747370.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Vibrio cholerae V52], ... gi\|282080, gi\|155167 - pir\|\|A42282 ferric uptake regulator - Vibrio cholerae, gi\|155167\|gb\|AAA27519.1\| fur [Vibrio cholera...	174.0	[0..1]	[149..1]
FUR_KLEPN - Ferric uptake regulation protein OS=Klebsiella pneumoniae GN=fur PE=3 SV=2	174.0	[0..1]	[143..1]
gi\|155169, gi\|421295 - pir\|\|A47054 ferric uptake regulator - Vibrio vulnificus, gi\|155169\|gb\|AAA27521.1\| iron regulatory pr...	173.0	[0..1]	[148..1]
FUR_VIBVU - Ferric uptake regulation protein OS=Vibrio vulnificus GN=fur PE=3 SV=2 FUR_VIBVU - Ferric uptake regulation protein OS=Vibrio vulnificus (strain CMCP6) GN=fur PE=3 SV=2	172.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNNQALKD AGLKVTLPRL KILEVLQQPD CQHISAEDLY KKLIDLGEEI GLATVYRVLN  60
   61 QFDDAGIVTR HHFEGGKSVF ELSTQHHHDH LVCLDCGEVI EFSDDIIEER QREIAAKYNV 120
  121 TLTNHSLYLY GKCSDGGCKE NPDAHKPAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.221849
Match:	1mzbA
Description:	Ferric uptake regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.51306541310201	bayes_pls_golite062009
DNA binding	4.12876602944304	bayes_pls_golite062009
nucleic acid binding	4.12610640813616	bayes_pls_golite062009
transcription factor activity	3.36245551077648	bayes_pls_golite062009
binding	2.88885372623841	bayes_pls_golite062009
sequence-specific DNA binding	1.57171040630767	bayes_pls_golite062009
transcription activator activity	1.46816740214642	bayes_pls_golite062009
transcription repressor activity	1.35320462873179	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.77269240913386	bayes_pls_golite062009
protein binding	0.753698599635855	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: