YRC Public Data Repository - Protein Structure Prediction

Protein:	LGUL_VIBPA
Organism:	Vibrio parahaemolyticus RIMD 2210633
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LGUL_VIBPA.

Description	E-value	Query Range	Subject Range
gi\|227081184, gi... - gi\|227081184\|ref\|YP_002809735.1\| lactoylglutathione lyase [Vibrio cholerae M66-2], gi\|227009072\|gb\|A... gi\|153829533, gi... - gi\|153829533\|ref\|ZP_01982200.1\| lactoylglutathione lyase [Vibrio cholerae 623-39], gi\|148874993\|gb\|E... gi\|229350904, gi... - gi\|229510939\|ref\|ZP_04400418.1\| lactoylglutathione lyase [Vibrio cholerae B33], gi\|229350904\|gb\|EEO1... gi\|229515396, gi... - gi\|229515396\|ref\|ZP_04404855.1\| lactoylglutathione lyase [Vibrio cholerae TMA 21], gi\|229347165\|gb\|E... gi\|9655474, gi\|1... - gi\|9655474\|gb\|AAF94171.1\| lactoylglutathione lyase [Vibrio cholerae O1 biovar El Tor str. N16961], g... gi\|227012827, gi... - gi\|227117377\|ref\|YP_002819273.1\| lactoylglutathione lyase [Vibrio cholerae O395], gi\|227012827\|gb\|AC... gi\|229357614, gi... - gi\|229505391\|ref\|ZP_04394901.1\| lactoylglutathione lyase [Vibrio cholerae BX 330286], gi\|229357614\|g... gi\|254843845, gi... - gi\|254848140\|ref\|ZP_05237490.1\| lactoylglutathione lyase [Vibrio cholerae MO10], gi\|254843845\|gb\|EET... gi\|229344775, gi... - gi\|229518060\|ref\|ZP_04407504.1\| lactoylglutathione lyase [Vibrio cholerae RC9], gi\|229344775\|gb\|EEO0... gi\|121628268, gi... - gi\|121729982\|ref\|ZP_01682399.1\| lactoylglutathione lyase [Vibrio cholerae V52], gi\|121628268\|gb\|EAX6... gi\|229371065, gi... - gi\|229608410\|ref\|YP_002879058.1\| lactoylglutathione lyase [Vibrio cholerae MJ-1236], gi\|229371065\|gb... LGUL_VIBCH - (Q9KT93) Probable lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxal...	154.0	[0..1]	[138..47]
gi\|91187534, gi\|... - gi\|91228903\|ref\|ZP_01262803.1\| lactoylglutathione lyase [Vibrio alginolyticus 12G01], gi\|91187534\|gb...	150.0	[0..1]	[138..1]
gi\|75829851, gi\|... - gi\|75829851\|ref\|ZP_00759141.1\| COG0346: Lactoylglutathione lyase and related lyases [Vibrio cholerae... LGUL_VIBCH - Probable lactoylglutathione lyase OS=Vibrio cholerae GN=gloA PE=3 SV=2 gi\|75814530 - gi\|75814530\|ref\|ZP_00745106.1\| COG0346: Lactoylglutathione lyase and related lyases [Vibrio cholerae... gi\|146316487, gi... - gi\|75826317\|ref\|ZP_00755752.1\| COG0346: Lactoylglutathione lyase and related lyases [Vibrio cholerae... gi\|153820545, gi... - gi\|153820545\|ref\|ZP_01973212.1\| lactoylglutathione lyase [Vibrio cholerae NCTC 8457], gi\|126508912\|g... gi\|229525623, gi... - gi\|229525623\|ref\|ZP_04415028.1\| lactoylglutathione lyase [Vibrio cholerae bv. albensis VL426], gi\|22... LGUL_VIBCH - Probable lactoylglutathione lyase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N...	147.0	[0..1]	[138..1]
gi\|37198112, gi\|... - gi\|37679369\|ref\|NP_933978.1\| lactoylglutathione lyase [Vibrio vulnificus YJ016], gi\|37198112\|dbj\|BAC...	147.0	[0..1]	[138..1]
gi\|197335824, gi... - gi\|197335824\|ref\|YP_002155691.1\| lactoylglutathione lyase [Vibrio fischeri MJ11], gi\|197317314\|gb\|AC... gi\|59711535, gi\|... - gi\|59711535\|ref\|YP_204311.1\| glyoxalase I, Ni-dependent [Vibrio fischeri ES114], gi\|59479636\|gb\|AAW8...	145.0	[0..1]	[138..1]
gi\|71669193, gi\|... - gi\|71677562\|ref\|ZP_00675298.1\| Glyoxalase I [Trichodesmium erythraeum IMS101], gi\|71669193\|gb\|EAO258...	145.0	[0..4]	[137..1]
gi\|53763628, gi\|... - gi\|75906364\|ref\|YP_320660.1\| glyoxalase I [Anabaena variabilis ATCC 29413], gi\|75700089\|gb\|ABA19765....	143.0	[0..4]	[128..1]
gi\|218708966, gi... - gi\|218708966\|ref\|YP_002416587.1\| Probable lactoylglutathione lyase [Vibrio splendidus LGP32], gi\|218... gi\|84376010, gi\|... - gi\|84393401\|ref\|ZP_00992160.1\| lactoylglutathione lyase [Vibrio splendidus 12B01], gi\|84376010\|gb\|EA... gi\|86147966, gi\|... - gi\|86147966\|ref\|ZP_01066270.1\| lactoylglutathione lyase [Vibrio sp. MED222], gi\|85834291\|gb\|EAQ52445...	143.0	[0..1]	[138..1]
gi\|497131 - gi\|497131\|gb\|AAA21576.1\| ORF1	142.0	[0..6]	[138..1]
gi\|237503531, gi... - gi\|237810899\|ref\|YP_002895350.1\| lactoylglutathione lyase (Methylglyoxalase)(Aldoketomutase) (Glyoxa... gi\|76809246, gi\|... - gi\|76809246\|ref\|YP_332289.1\| lactoylglutathione lyase [Burkholderia pseudomallei 1710b], gi\|76578699...	142.0	[0..2]	[129..108]

Back

Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGRILHTM LRVGDLDKSI KFYTEVMGMQ LLRTNENKEY EYTLAFVGYG DESQGAVIEL  60
   61 TYNWGKTEYD LGTAFGHIAI GVDDIYATCD AIKAAGGNVT REAGPVKGGT THIAFVKDPD 120
  121 GYMIELIQNK QASAGLEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1f9zA
Description:	Glyoxalase I (lactoylglutathione lyase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
lactoylglutathione lyase activity	3.91334658149719	bayes_pls_golite062009
carbon-sulfur lyase activity	1.44168339433372	bayes_pls_golite062009
catalytic activity	1.21778090213032	bayes_pls_golite062009
binding	0.78394104122898	bayes_pls_golite062009
protein binding	0.0335467332601391	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: