YRC Public Data Repository - Protein Structure Prediction

Protein:	FLAG_VIBPA
Organism:	Vibrio parahaemolyticus RIMD 2210633
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLAG_VIBPA.

Description	E-value	Query Range	Subject Range
gi\|551514 - gi\|551514\|gb\|AAC27802.1\| FlaG [Vibrio parahaemolyticus] gi\|153837009, gi... - gi\|153837009\|ref\|ZP_01989676.1\| FlaG [Vibrio parahaemolyticus AQ3810], gi\|149749782\|gb\|EDM60527.1\| F...	155.0	[0..1]	[144..1]
gi\|91191622, gi\|... - gi\|91223536\|ref\|ZP_01258801.1\| flagellar protein FlaG [Vibrio alginolyticus 12G01], gi\|91191622\|gb\|E...	146.0	[0..1]	[144..1]
gi\|75856762, gi\|... - gi\|75856762\|ref\|ZP_00764385.1\| COG1334: Uncharacterized flagellar protein FlaG [Vibrio sp. Ex25], gi...	145.0	[0..1]	[144..1]
gi\|37199423, gi\|... - gi\|37680674\|ref\|NP_935283.1\| flagellar protein FlaG [Vibrio vulnificus YJ016], gi\|37199423\|dbj\|BAC95... gi\|27365272, gi\|... - gi\|27365272\|ref\|NP_760800.1\| flagellar protein FlaG [Vibrio vulnificus CMCP6], gi\|27361419\|gb\|AAO103...	128.0	[0..1]	[144..1]
gi\|86146144, gi\|... - gi\|86146144\|ref\|ZP_01064470.1\| flagellar protein FlaG [Vibrio sp. MED222], gi\|85836091\|gb\|EAQ54223.1...	128.0	[0..1]	[144..1]
gi\|197751283, gi... - gi\|254291378\|ref\|ZP_04962171.1\| flagellin FlaG [Vibrio cholerae AM-19226], gi\|197751283\|ref\|YP_00217... gi\|148875887, gi... - gi\|153828616\|ref\|ZP_01981283.1\| flagellin FlaG [Vibrio cholerae 623-39], gi\|148875887\|gb\|EDL74022.1\|... gi\|153825620, gi... - gi\|153825620\|ref\|ZP_01978287.1\| flagellin FlaG [Vibrio cholerae MZO-2], gi\|149740771\|gb\|EDM54870.1\| ... gi\|121586803, gi... - gi\|121586803\|ref\|ZP_01676585.1\| flagellin FlaG [Vibrio cholerae 2740-80], gi\|121548970\|gb\|EAX59009.1... FLAG_VIBCH - Protein flaG OS=Vibrio cholerae GN=flaG PE=4 SV=1 gi\|124116078, gi... - gi\|153213278\|ref\|ZP_01948690.1\| flagellin FlaG [Vibrio cholerae 1587], gi\|124116078\|gb\|EAY34898.1\| f... gi\|124118170, gi... - gi\|153223532\|ref\|ZP_01953934.1\| flagellin FlaG [Vibrio cholerae MAK 757], gi\|124118170\|gb\|EAY36913.1... gi\|153801663, gi... - gi\|153801663\|ref\|ZP_01956249.1\| flagellin FlaG [Vibrio cholerae MZO-3], gi\|124122840\|gb\|EAY41583.1\| ... gi\|75824655, gi\|... - gi\|75824655\|ref\|ZP_00754103.1\| COG1334: Uncharacterized flagellar protein FlaG [Vibrio cholerae RC38... gi\|126510662, gi... - gi\|153818819\|ref\|ZP_01971486.1\| flagellin FlaG [Vibrio cholerae NCTC 8457], gi\|126510662\|gb\|EAZ73256... gi\|75818882, gi\|... - gi\|75818882\|ref\|ZP_00748997.1\| COG1334: Uncharacterized flagellar protein FlaG [Vibrio cholerae V51]... gi\|153822612, gi... - gi\|229511989\|ref\|ZP_04401468.1\| flagellin protein FlaG [Vibrio cholerae B33], gi\|229351954\|gb\|EEO168... gi\|121630415, gi... - gi\|75816878\|ref\|ZP_00747336.1\| COG1334: Uncharacterized flagellar protein FlaG [Vibrio cholerae V52]... gi\|227010154, gi... - gi\|227082266\|ref\|YP_002810817.1\| flagellin FlaG [Vibrio cholerae M66-2], gi\|227010154\|gb\|ACP06366.1\|... gi\|229355279, gi... - gi\|229507774\|ref\|ZP_04397279.1\| flagellin protein FlaG [Vibrio cholerae BX 330286], gi\|229355279\|gb\|... gi\|229513792, gi... - gi\|229513792\|ref\|ZP_04403254.1\| flagellin protein FlaG [Vibrio cholerae TMA 21], gi\|229348973\|gb\|EEO... FLAG_VIBCH - Protein FlaG OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=flaG PE=4 S... gi\|229519125, gi... - gi\|229519125\|ref\|ZP_04408568.1\| flagellin protein FlaG [Vibrio cholerae RC9], gi\|229343814\|gb\|EEO087... gi\|229332621, gi... - gi\|229528847\|ref\|ZP_04418237.1\| flagellin protein FlaG [Vibrio cholerae 12129(1)], gi\|229332621\|gb\|E... gi\|229607319, gi... - gi\|229607319\|ref\|YP_002877967.1\| flagellin protein FlaG [Vibrio cholerae MJ-1236], gi\|229369974\|gb\|A... gi\|254849227, gi... - gi\|75830330\|ref\|ZP_00759610.1\| COG1334: Uncharacterized flagellar protein FlaG [Vibrio cholerae MO10... FLAG_VIBC3 - Protein FlaG OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) GN=flaG...	125.0	[0..1]	[144..1]
gi\|84388103, gi\|... - gi\|84388103\|ref\|ZP_00990999.1\| flagellar protein FlaG [Vibrio splendidus 12B01], gi\|84377170\|gb\|EAP9...	125.0	[0..1]	[144..1]
FLAG_VIBAN - Protein FlaG (Fragment) OS=Vibrio anguillarum GN=flaG PE=4 SV=1	118.0	[0..1]	[135..1]
gi\|114319863, gi... - gi\|78701921\|ref\|ZP_00866367.1\| flagellin FlaG, putative [Alkalilimnicola ehrlichei MLHE-1], gi\|78520...	111.0	[0..1]	[137..1]
gi\|134300252, gi... - gi\|88945372\|ref\|ZP_01148549.1\| similar to Uncharacterized flagellar protein FlaG [Desulfotomaculum r...	100.0	[0..28]	[143..14]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISFYASNI QPYGTPNGTN VANKNGNGIG TPSTASSTGD VSPQKAKGTE HDFSVQAAIE  60
   61 MAESRQELNR EEREKMVEQM NEFVSSINKG VAFRVDEESG RDVVTIYEAN TGDVIRQFPD 120
  121 EELLVVLRRL AEHTANSGLL VEKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	2hc5A
Description:	No description for 2hc5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits