YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29137154, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29137154, gi|....

Description	E-value	Query Range	Subject Range
NUDL_SALPB - Uncharacterized Nudix hydrolase nudL OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nudL... gi\|238912110 - gi\|238912110\|ref\|ZP_04655947.1\| hypothetical protein SentesTe_13391 [Salmonella enterica subsp. ente... NUDL_SALCH - Uncharacterized Nudix hydrolase nudL OS=Salmonella choleraesuis GN=nudL PE=3 SV=1 NUDL_SALCH - Uncharacterized Nudix hydrolase NudL OS=Salmonella choleraesuis GN=nudL PE=3 SV=1 NUDL_SALTY - Uncharacterized Nudix hydrolase NudL OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... gi\|16760715 - gi\|16760715\|ref\|NP_456332.1\| hypothetical protein STY1955 [Salmonella enterica subsp. enterica serov... NUDL_SALTI, YEAB... - Uncharacterized Nudix hydrolase yeaB - Salmonella typhi, Uncharacterized Nudix hydrolase nudL OS=Sal... NUDL_SALTI - Uncharacterized Nudix hydrolase NudL OS=Salmonella typhi GN=nudL PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yeaB] [protein=hypothetical protein] [protein_id=YP_005237766.1] [location=1933939..1934517] NUDL_SALSV - Uncharacterized Nudix hydrolase NudL OS=Salmonella schwarzengrund (strain CVM19633) GN=nudL PE=3 SV=... gi\|197243474, gi... - gi\|197265219\|ref\|ZP_03165293.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar... gi\|200390948, gi... - gi\|200390948\|ref\|ZP_03217559.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar... NUDL_SALEP - Uncharacterized Nudix hydrolase NudL OS=Salmonella enteritidis PT4 (strain P125109) GN=nudL PE=3 SV=... gi\|205331753, gi... - gi\|205331753\|gb\|EDZ18517.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar Ken... NUDL_SALTY - Uncharacterized Nudix hydrolase NudL OS=Salmonella typhimurium GN=nudL PE=3 SV=1 gi\|168237891, gi... - gi\|197289254\|gb\|EDY28621.1\| hydrolase, nudix family protein [Salmonella enterica subsp. enterica ser... gi\|168259937, gi... - gi\|205350926\|gb\|EDZ37557.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar Had... gi\|194469460, gi... - gi\|194469460\|ref\|ZP_03075444.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar... NUDL_SALTY, YEAB... - Uncharacterized Nudix hydrolase yeaB - Salmonella typhimurium, Uncharacterized Nudix hydrolase nudL ... NUDL_SALCH - Uncharacterized Nudix hydrolase NudL OS=Salmonella choleraesuis (strain SC-B67) GN=nudL PE=3 SV=1 gi\|167553494, gi... - gi\|205322084\|gb\|EDZ09923.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar Sai... gi\|167993280, gi... - gi\|205328681\|gb\|EDZ15445.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar 4,[... NUDL_SALPB - Uncharacterized Nudix hydrolase NudL OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nudL... gi\|214001095 - gi\|214001095\|ref\|ZP_03411830.1\| hypothetical protein Salmonellentericaenterica_11425 [Salmonella ent... NUDL_SALPC - Uncharacterized Nudix hydrolase NudL OS=Salmonella paratyphi C (strain RKS4594) GN=nudL PE=3 SV=1 gi\|213052616 - gi\|213052616\|ref\|ZP_03345494.1\| hypothetical protein Salmoneentericaenterica_06676 [Salmonella enter... gi\|213426601 - gi\|213426601\|ref\|ZP_03359351.1\| hypothetical protein SentesTyphi_13898 [Salmonella enterica subsp. e... gi\|213583671 - gi\|213583671\|ref\|ZP_03365497.1\| hypothetical protein SentesTyph_21615 [Salmonella enterica subsp. en... gi\|213650133 - gi\|213650133\|ref\|ZP_03380186.1\| hypothetical protein SentesTy_24524 [Salmonella enterica subsp. ente...	5.0E-40	[1..192]	[1..192]
NUDL_SALPA - Uncharacterized Nudix hydrolase NudL OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nudL P... NUDL_SALPA - Uncharacterized Nudix hydrolase NudL OS=Salmonella paratyphi A GN=nudL PE=3 SV=1 NUDL_SALPK - Uncharacterized Nudix hydrolase NudL OS=Salmonella paratyphi A (strain AKU_12601) GN=nudL PE=3 SV=1 NUDL_SALA4 - Uncharacterized Nudix hydrolase NudL OS=Salmonella agona (strain SL483) GN=nudL PE=3 SV=1 NUDL_SALHS - Uncharacterized Nudix hydrolase NudL OS=Salmonella heidelberg (strain SL476) GN=nudL PE=3 SV=1 gi\|168820575, gi... - gi\|205342622\|gb\|EDZ29386.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar Wel... gi\|168241418, gi... - gi\|205339467\|gb\|EDZ26231.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar Hei...	2.0E-39	[1..192]	[1..192]
NUDL_PHOLL - Uncharacterized Nudix hydrolase NudL OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 ... NUDL_PHOLL - Uncharacterized Nudix hydrolase nudL OS=Photorhabdus luminescens subsp. laumondii GN=nudL PE=3 SV=1	2.0E-34	[6..188]	[2..185]
gi\|113970463, gi... - gi\|82497991\|ref\|ZP_00883510.1\| MutT/nudix family protein [Shewanella sp. MR-4], gi\|82404004\|gb\|EAP44...	1.0E-33	[1..188]	[1..188]
gi\|78692417, gi\|... - gi\|78692417\|ref\|ZP_00856946.1\| MutT/nudix family protein [Shewanella sp. MR-7], gi\|78508179\|gb\|EAP21...	1.0E-33	[1..188]	[1..188]
NUDL_ERWCT - Uncharacterized Nudix hydrolase NudL OS=Erwinia carotovora subsp. atroseptica GN=nudL PE=3 SV=1 NUDL_PECAS - Uncharacterized Nudix hydrolase NudL OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672...	1.0E-33	[4..192]	[4..192]
gi\|78504245, gi\|... - gi\|78688003\|ref\|ZP_00852731.1\| MutT/nudix family protein [Shewanella sp. ANA-3], gi\|78504245\|gb\|EAP1...	2.0E-33	[1..188]	[1..188]
gi\|25522240, gi\|... - pir\|\|AB2853 NTP pyrophosphohydrolase, MutT family [imported] - Agrobacterium tumefaciens (strain C58... gi\|17740724, gi\|... - gi\|17936134\|ref\|NP_532924.1\| NTP pyrophosphohydrolase, MutT family [Agrobacterium tumefaciens str. C...	3.0E-33	[9..189]	[28..209]
gi\|45915852, gi\|... - gi\|69276884\|ref\|ZP_00612356.1\| NUDIX hydrolase [Mesorhizobium sp. BNC1], gi\|68191783\|gb\|EAN06438.1\| ...	3.0E-33	[2..191]	[5..211]
gi\|225853032, gi... - gi\|225853032\|ref\|YP_002733265.1\| NUDIX hydrolase [Brucella melitensis ATCC 23457], gi\|225641397\|gb\|A... gi\|225627994, gi... - gi\|225627994\|ref\|ZP_03786030.1\| MutT/nudix family protein [Brucella ceti str. Cudo], gi\|225617157\|gb... gi\|62290438, gi\|... - gi\|62290438\|ref\|YP_222231.1\| MutT/nudix family protein [Brucella abortus bv. 1 str. 9-941], gi\|62196... gi\|254697884 - gi\|254697884\|ref\|ZP_05159712.1\| NUDIX hydrolase [Brucella abortus bv. 2 str. 86/8/59] gi\|254694229 - gi\|254694229\|ref\|ZP_05156057.1\| NUDIX hydrolase [Brucella abortus bv. 3 str. Tulya] gi\|254689740 - gi\|254689740\|ref\|ZP_05152994.1\| NUDIX hydrolase [Brucella abortus bv. 6 str. 870] gi\|237789244, gi... - gi\|237815946\|ref\|ZP_04594943.1\| MutT/nudix family protein [Brucella abortus str. 2308 A], gi\|2377892... gi\|254710591 - gi\|254710591\|ref\|ZP_05172402.1\| NUDIX hydrolase [Brucella pinnipedialis B2/94] gi\|254708221 - gi\|254708221\|ref\|ZP_05170049.1\| NUDIX hydrolase [Brucella pinnipedialis M163/99/10] gi\|254704807 - gi\|254704807\|ref\|ZP_05166635.1\| NUDIX hydrolase [Brucella suis bv. 3 str. 686] gi\|254702275 - gi\|254702275\|ref\|ZP_05164103.1\| NUDIX hydrolase [Brucella suis bv. 5 str. 513] gi\|254730775 - gi\|254730775\|ref\|ZP_05189353.1\| NUDIX hydrolase [Brucella abortus bv. 4 str. 292] gi\|189024668, gi... - gi\|189024668\|ref\|YP_001935436.1\| MutT/nudix family protein [Brucella abortus S19], gi\|189020240\|gb\|A... gi\|254717835 - gi\|254717835\|ref\|ZP_05179646.1\| NUDIX hydrolase [Brucella ceti M13/05/1] gi\|161619497, gi... - gi\|161619497\|ref\|YP_001593384.1\| NUDIX hydrolase [Brucella canis ATCC 23365], gi\|161336308\|gb\|ABX626... gi\|254714774 - gi\|254714774\|ref\|ZP_05176585.1\| NUDIX hydrolase [Brucella ceti M644/93/1]	4.0E-33	[2..189]	[22..206]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSRLTLDH FLSRFQLLRP QMTHETLNQR QAAVLIPVVR RPQPGLLLTQ RAIHLRKHAG  60
   61 QVAFPGGAVD STDASLIAAA LREAQEEVAI PPQAVEVIGV LPPVDSVTGF QVTSVVGIIP 120
  121 PNLPWRASED EVSAVFEMPL AQALQLGRYH PLDVYRRGNS HRVWLSWYEH YFVWGMTANI 180
  181 LRELALQIGV KP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009
hydrolase activity	0.0197788019342109	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: