YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29139466, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29139466, gi|....

Description	E-value	Query Range	Subject Range
gi\|70878483 - gi\|70878483\|gb\|EAN91735.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71649745 - gi\|71649745\|ref\|XP_813586.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	2.0E-29	[2..283]	[754..1037]
gi\|8163672 - gi\|8163672\|gb\|AAF73794.1\|AF154025_1 surface protein PspC [Streptococcus pneumoniae]	4.0E-28	[5..287]	[156..436]
gi\|62130185, gi\|... - gi\|62182552\|ref\|YP_218969.1\| essential cell division protein [Salmonella enterica subsp. enterica se...	2.0E-27	[1..331]	[1..331]
gi\|25513227, gi\|... - gi\|25513227\|pir\|\|AH0938 cell division protein [imported] - Salmonella enterica subsp. enterica serov... gi\|16762342 - gi\|16762342\|ref\|NP_457959.1\| essential cell division protein [Salmonella enterica subsp. enterica se...	6.0E-27	[1..331]	[1..330]
lcl\|NC_016856.1_... - [gene=ftsN] [protein=essential cell division protein] [protein_id=YP_005240374.1] [location=compleme... gi\|16422660, gi\|... - gi\|16767359\|ref\|NP_462974.1\| essential cell division protein [Salmonella typhimurium LT2], gi\|164226... gi\|205359965, gi... - gi\|205359965\|ref\|ZP_03224474.1\| cell division protein FtsN [Salmonella enterica subsp. enterica sero... gi\|197264434, gi... - gi\|197264434\|ref\|ZP_03164508.1\| cell division protein FtsN [Salmonella enterica subsp. enterica sero... gi\|205357709, gi... - gi\|205357709\|ref\|ZP_03223812.1\| cell division protein FtsN [Salmonella enterica subsp. enterica sero... gi\|197214190, gi... - gi\|197250487\|ref\|YP_002149021.1\| cell division protein FtsN [Salmonella enterica subsp. enterica ser...	3.0E-26	[1..331]	[1..324]
gi\|56130194, gi\|... - gi\|56415937\|ref\|YP_153012.1\| essential cell division protein FtsN [Salmonella enterica subsp. enteri...	3.0E-26	[1..331]	[1..323]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRDYVRRG QPAPSRRKKS TSRNSRKKQS NMPAVSPAMV AIAAAVLVTF IGGLYFITHH  60
   61 KKEESETLQN QKVTGNGLPP KPEERW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	1nekD
Description:	Succinate dehydrogenase subunit SdhD
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [87-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYIKELESRQ PGVRTPTEPS AGGEVMNPNQ LTSEQRQLLE QMQADMRQQP TQLNEVPWNE  60
   61 QTPEQRQQTL QRQRQAQQQQ QQQQQQQWAQ TQPVQQPRTQ PRVNEQPQTR TVQSAPAQPA 120
  121 RQSQPPKQTA SQQPYQDLLQ TPAHTSAAAP KAAPITRAP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #3

Region A:
Residues: [246-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAPKATAEKK DERRWMVQCG SFKGAEQAES VRAQLAFEGF DSKITTNNGW NRVVIGPVKG  60
   61 KENADSTINR LKMAGHTNCI RLATGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1utaA
Description:	Solution structure of the C-terminal RNP domain from the divisome protein FtsN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits