YRC Public Data Repository - Protein Structure Prediction

Protein:	HGNC:2475\|MIM:60...
Organism:	SPECIES UNKNOWN
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HGNC:2475|MIM:60....

Description	E-value	Query Range	Subject Range
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	6.0E-43	[1..146]	[1..140]
CYTC_MACMU - Cystatin-C OS=Macaca mulatta GN=CST3 PE=2 SV=1	4.0E-40	[21..146]	[21..146]
CYTC_RABIT - Cystatin-C OS=Oryctolagus cuniculus GN=CST3 PE=2 SV=1	1.0E-39	[22..146]	[24..148]
CYTC_SAISC - Cystatin-C OS=Saimiri sciureus GN=CST3 PE=2 SV=1	2.0E-39	[22..146]	[22..146]
gi\|60831800 - gi\|60831800\|gb\|AAX36984.1\| cystatin C [synthetic construct]	3.0E-39	[21..146]	[21..146]
gi\|226712 - gi\|226712\|prf\|\|1604194A cystatin C	3.0E-39	[18..146]	[1..127]
gi\|181387 - gi\|181387\|gb\|AAA52164.1\| cystatin C	4.0E-39	[21..146]	[21..146]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPLRAPLL LLAILAVALA VSPAAGSSPG KPPRLVGGPM DASVEEEGVR RALDFAVGEY  60
   61 NKASNDMYHS RALQVVRARK QIVAGVNYFL DVELGRTTCT KTQPNLDNCP FHDQPHLKRK 120
  121 AFCSFQIYAV PWQGTMTLSK STCQDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1g96A
Description:	Cystatin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits