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View Structure Prediction Details

Protein: HGNC:26077|MIM:6...
Organism: SPECIES UNKNOWN
Length: 272 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HGNC:26077|MIM:6....

Description E-value Query
Range
Subject
Range
gi|26331438 - gi|26331438|dbj|BAC29449.1| unnamed protein product [Mus musculus]
3.0E-71 [1..272] [8..279]
gi|114596698 - gi|114596698|ref|XP_517518.2| PREDICTED: membrane-associated RING-CH protein I isoform 5 [Pan troglo...
4.0E-71 [1..272] [1..272]
gi|109503238, gi... - gi|209447115|ref|NP_001129310.1| membrane-associated ring finger (C3HC4) 1 [Rattus norvegicus], gi|1...
6.0E-67 [12..272] [25..285]
MARCH1 - membrane-associated ring finger (C3HC4) 1
2.0E-66 [15..272] [32..289]
gi|109076069, gi... - gi|109076069|ref|XP_001099555.1| PREDICTED: similar to membrane-associated RING-CH protein I isoform...
7.0E-66 [15..272] [32..289]

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Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSHVCCNF LNMWKKSKIS TMYYLNQDAK LSNLFLQASS PTTGTAPRSQ SRLSVCPSTQ  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [61-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DICRICHCEG DEESPLITPC RCTGTLRFVH QSCLHQWIKS SDTRCCELCK YDFIMETKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 2d8sA
Description: No description for 2d8sA was found.

Predicted Domain #3
Region A:
Residues: [120-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPLRKWEKLQ MTTSERRKIF CSVTFHVIAI TCVVWSLYVL IDRTAEEIKQ GNDNGVLEWP  60
   61 FWTKLVVVAI GFTGGLVFMY VQCKVYVQLW RRLKAYNRVI FVQNCPDTAK KLEKNFSCNV 120
  121 NTDIKDAVVV PVPQTGANSL PSAEGGPPEV VSV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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