YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29342341, gi\|...
Organism:	Enterococcus faecalis V583
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29342341, gi|....

Description	E-value	Query Range	Subject Range
gi\|206732814, gi... - gi\|206972240\|ref\|ZP_03233187.1\| cobalt transport protein [Bacillus cereus AH1134], gi\|206732814\|gb\|E... gi\|29893950, gi\|... - gi\|30018410\|ref\|NP_830041.1\| cobalt transport protein cbiQ [Bacillus cereus ATCC 14579], gi\|29893950...	208.0	[0..2]	[265..1]
gi\|68194964, gi\|... - gi\|69247199\|ref\|ZP_00604261.1\| Cobalt transport protein [Enterococcus faecium DO], gi\|68194964\|gb\|EA... gi\|48824751 - ref\|ZP_00286090.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ and related tr...	208.0	[0..1]	[264..1]
gi\|218544229, gi... - gi\|218895276\|ref\|YP_002443687.1\| cobalt transport protein [Bacillus cereus G9842], gi\|218544229\|gb\|A... gi\|75764617, gi\|... - gi\|75764617\|ref\|ZP_00744061.1\| Cobalt transport protein cbiQ [Bacillus thuringiensis serovar israele...	208.0	[0..2]	[265..1]
gi\|218901346, gi... - gi\|218901346\|ref\|YP_002449180.1\| cobalt transport protein [Bacillus cereus AH820], gi\|218535401\|gb\|A... gi\|30260332, gi\|... - gi\|30260332\|ref\|NP_842709.1\| cobalt transport protein [Bacillus anthracis str. Ames], gi\|30253653\|gb... gi\|47525397, gi\|... - gi\|47525397\|ref\|YP_016746.1\| cobalt transport protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|21398099 - ref\|NP_654084.1\| CbiQ, Cobalt transport protein [Bacillus anthracis str. A2012] gi\|225788254, gi... - gi\|225862193\|ref\|YP_002747571.1\| cobalt transport protein [Bacillus cereus 03BB102], gi\|225788254\|gb... gi\|118415134, gi... - gi\|118475909\|ref\|YP_893060.1\| cobalt ABC transporter, permease component [Bacillus thuringiensis str... gi\|227002880, gi... - gi\|227812814\|ref\|YP_002812823.1\| cobalt transport protein [Bacillus anthracis str. CDC 684], gi\|2270... gi\|254726280 - gi\|254726280\|ref\|ZP_05188062.1\| cobalt transport protein [Bacillus anthracis str. A1055] gi\|254735285 - gi\|254735285\|ref\|ZP_05192993.1\| cobalt transport protein [Bacillus anthracis str. Western North Amer... gi\|229603881, gi... - gi\|229603881\|ref\|YP_002864792.1\| cobalt transport protein [Bacillus anthracis str. A0248], gi\|229268... gi\|254686640 - gi\|254686640\|ref\|ZP_05150499.1\| cobalt transport protein [Bacillus anthracis str. CNEVA-9066] gi\|52145078, gi\|... - gi\|52145078\|ref\|YP_081751.1\| cobalt ABC transporter permease [Bacillus cereus E33L], gi\|51978547\|gb\|... gi\|254756840 - gi\|254756840\|ref\|ZP_05208868.1\| cobalt transport protein [Bacillus anthracis str. Australia 94] gi\|49183175, gi\|... - gi\|49183175\|ref\|YP_026427.1\| cobalt transport protein [Bacillus anthracis str. Sterne], gi\|49177102\|... gi\|254739477 - gi\|254739477\|ref\|ZP_05197175.1\| cobalt transport protein [Bacillus anthracis str. Kruger B] gi\|49481686, gi\|... - gi\|49481686\|ref\|YP_034492.1\| cobalt ABC transporter permease [Bacillus thuringiensis serovar konkuki... gi\|254755531 - gi\|254755531\|ref\|ZP_05207565.1\| cobalt transport protein [Bacillus anthracis str. Vollum] gi\|196041150, gi... - gi\|196041150\|ref\|ZP_03108446.1\| cobalt transport protein [Bacillus cereus NVH0597-99], gi\|196028085\|... gi\|196022927, gi... - gi\|196046182\|ref\|ZP_03113409.1\| cobalt transport protein [Bacillus cereus 03BB108], gi\|196022927\|gb\|... gi\|190567400, gi... - gi\|190567400\|ref\|ZP_03020314.1\| cobalt transport protein [Bacillus anthracis Tsiankovskii-I], gi\|190... gi\|196036006, gi... - gi\|196036006\|ref\|ZP_03103407.1\| cobalt transport protein [Bacillus cereus W], gi\|195991375\|gb\|EDX553... gi\|170125624, gi... - gi\|170709468\|ref\|ZP_02899871.1\| cobalt transport protein [Bacillus anthracis str. A0389], gi\|1701256... gi\|172079842, gi... - gi\|177656194\|ref\|ZP_02937175.1\| cobalt transport protein [Bacillus anthracis str. A0174], gi\|1720798... gi\|167642073, gi... - gi\|167642073\|ref\|ZP_02400297.1\| cobalt transport protein [Bacillus anthracis str. A0193], gi\|1675099... gi\|170689679, gi... - gi\|170689679\|ref\|ZP_02880857.1\| cobalt transport protein [Bacillus anthracis str. A0465], gi\|1706663... gi\|164710914, gi... - gi\|165873346\|ref\|ZP_02217947.1\| cobalt transport protein [Bacillus anthracis str. A0488], gi\|1647109...	208.0	[0..2]	[265..1]
gi\|227896805, gi... - gi\|227896805\|ref\|ZP_04014610.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|254556053, gi... - gi\|254556053\|ref\|YP_003062470.1\| ABC transporter, permease protein [Lactobacillus plantarum JDM1], g... gi\|28377869, gi\|... - gi\|28377869\|ref\|NP_784761.1\| ABC transporter, permease protein [Lactobacillus plantarum WCFS1], gi\|2...	208.0	[0..1]	[264..1]
gi\|47570253, gi\|... - gi\|47570253\|ref\|ZP_00240904.1\| cobalt transport family protein [Bacillus cereus G9241], gi\|47553077\|...	207.0	[0..2]	[265..1]
gi\|206743750, gi... - gi\|206978037\|ref\|ZP_03238922.1\| cobalt transport protein [Bacillus cereus H3081.97], gi\|206743750\|gb... gi\|42779222, gi\|... - gi\|42779222\|ref\|NP_976469.1\| cobalt transport protein [Bacillus cereus ATCC 10987], gi\|42735137\|gb\|A... gi\|221237959, gi... - gi\|222093911\|ref\|YP_002527961.1\| ABC transporter, permease; possible cobalt transport protein [Bacil... gi\|217063698, gi... - gi\|217957716\|ref\|YP_002336260.1\| cobalt transport protein [Bacillus cereus AH187], gi\|217063698\|gb\|A...	207.0	[0..2]	[265..1]
gi\|89208828, gi\|... - gi\|89208828\|ref\|ZP_01187312.1\| Cobalt transport protein [Bacillus weihenstephanensis KBAB4], gi\|8915...	205.0	[0..2]	[265..1]
gi\|52346505, gi\|... - gi\|52784003\|ref\|YP_089832.1\| YbaF [Bacillus licheniformis ATCC 14580], gi\|52346505\|gb\|AAU39139.1\| Yb...	205.0	[0..1]	[265..1]
gi\|65317586 - gi\|65317586\|ref\|ZP_00390545.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ an...	205.0	[0..5]	[265..1]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNKLIFGRY IPGDSFIHRL DPRAKLLASF YFIGIIFLAN NWQSYVLIAA FTAFAISLSK  60
   61 ISARFFIRGV RPLLWLILFT VALQTLFTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGEVYFQWGI ISITQFGVTN GLFIFCRFVL IIFMSTLLTL TTAPLELSDA IEYLLRPLHV  60
   61 VKFPVHEVSL MLSIALRFVP TLMDETEKIM NAQRARGVDF GEGNLLQKMK AIVPLLIPLF 120
  121 VSSFNRAEDL ATAMEARGYQ GGEGRTKYRI LHWHLRDTIV MFGFVLLTIG LFVLRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits