YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29344665, gi\|...
Organism:	Enterococcus faecalis V583
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29344665, gi|....

Description	E-value	Query Range	Subject Range
gi\|254852720 - gi\|254852720\|ref\|ZP_05242068.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL R2-503... gi\|254826145 - gi\|254826145\|ref\|ZP_05231146.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J1-194... gi\|225876878, gi... - gi\|226224416\|ref\|YP_002758523.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes Clip81459... gi\|255521928 - gi\|255521928\|ref\|ZP_05389165.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J1-175... gi\|254994429 - gi\|254994429\|ref\|ZP_05276619.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J2-064... gi\|254878069 - gi\|254878069\|ref\|ZP_05250779.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J2-071... gi\|46881315, gi\|... - gi\|46908045\|ref\|YP_014434.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria mon... gi\|126943595, gi... - gi\|254899490\|ref\|ZP_05259414.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes J0161], gi... gi\|153167657, gi... - gi\|153167657\|ref\|ZP_01927761.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria ... gi\|127765100, gi... - gi\|254912371\|ref\|ZP_05262383.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes J2818], gi... gi\|153202811, gi... - gi\|254933285\|ref\|ZP_05266644.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes HPB2262], ... gi\|254936698, gi... - gi\|254936698\|ref\|ZP_05268395.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes F6900], gi...	220.0	[0..4]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELRFNSVF DIIGPVMIGP SSSHTAGAAR IGKVVRSIFG QQPDSVDIYL YESFAKTYRG  60
   61 HGTDIALVGG LLGMEPDDEQ LSNSLEIAYE QGMEVCFIPK SEKADHPNSV KIVVSSGDRK 120
  121 LSVTGISIGG GNIQISELNG FKLSLSMGTP TFIVVHQDVP GMIAKVTNIL SASDINISTM 180
  181 TVTRESKGEK AIMIIEVDQA EVGDIVMQLA EIPHIYSVNY FD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.30103
Match:	1psdA
Description:	Phosphoglycerate dehydrogenase; Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	2.7207189033055	bayes_pls_golite062009
oxidoreductase activity	1.95477050413	bayes_pls_golite062009
acetolactate synthase activity	1.81856869558384	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.771153340292	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.66554302844944	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009
phosphoglycerate dehydrogenase activity	0.0511824933768104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: