YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29540989, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540989, gi|....

Description	E-value	Query Range	Subject Range
gi\|24981477, gi\|... - gi\|26986875\|ref\|NP_742300.1\| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas putida K...	236.0	[0..5]	[245..26]
tr\|Q88AP8\|Q88AP8... - N-acetylmuramoyl-L-alanine amidase, family 2 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=P... gi\|28850804, gi\|... - gi\|28867569\|ref\|NP_790188.1\| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. tomato str...	235.0	[0..5]	[245..22]
gi\|82715560, gi\|... - gi\|82737396\|ref\|ZP_00900246.1\| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas putida F1],... tr\|E4RAR9\|E4RAR9... - AmiD OS=Pseudomonas putida (strain BIRD-1) GN=amiD PE=4 SV=1	235.0	[0..5]	[245..26]
gi\|71554603, gi\|... - gi\|71734050\|ref\|YP_272559.1\| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. phaseolico...	233.0	[0..5]	[245..22]
gi\|66043535, gi\|... - gi\|66043535\|ref\|YP_233376.1\| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. syringae B...	232.0	[0..5]	[245..46]
gi\|94417198, gi\|... - gi\|94417198\|ref\|ZP_01297017.1\| hypothetical protein PaerP_01000994 [Pseudomonas aeruginosa PA7], gi\|...	230.0	[0..5]	[243..23]
gi\|95108383, gi\|... - gi\|95108383\|emb\|CAK13077.1\| putative N-acetylmuramoyl-L-alanine amidase [Pseudomonas entomophila L48... gi\|95108383 - gi\|95108383\|emb\|CAK13077.1\| putative N-acetylmuramoyl-L-alanine amidase [Pseudomonas entomophila L48...	229.0	[0..5]	[246..22]
gi\|48733063, gi\|... - gi\|77456277\|ref\|YP_345782.1\| AmpD [Pseudomonas fluorescens Pf0-1], gi\|77380280\|gb\|ABA71793.1\| putati...	229.0	[0..6]	[245..23]
gi\|107104587 - gi\|107104587\|ref\|ZP_01368505.1\| hypothetical protein PaerPA_01005666 [Pseudomonas aeruginosa PACS2] gi\|126169764, gi... - gi\|84318098\|ref\|ZP_00966527.1\| COG3023: Negative regulator of beta-lactamase expression [Pseudomonas... gi\|84324948, gi\|... - gi\|84324948\|ref\|ZP_00973000.1\| COG3023: Negative regulator of beta-lactamase expression [Pseudomonas... gi\|218894588, gi... - gi\|218894588\|ref\|YP_002443458.1\| AmpDh2 [Pseudomonas aeruginosa LESB58], gi\|218774817\|emb\|CAW30635.1... gi\|15600678, gi\|... - gi\|9951819\|gb\|AAG08870.1\|AE004961_5 AmpDh2 [Pseudomonas aeruginosa PAO1], gi\|15600678\|ref\|NP_254172.... gi\|11348345 - pir\|\|D82960 conserved hypothetical protein PA5485 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|32043056, gi\|... - gi\|32043056\|ref\|ZP_00140318.1\| COG3023: Negative regulator of beta-lactamase expression [Pseudomonas...	229.0	[0..5]	[243..23]
gi\|49082910 - gi\|49082910\|gb\|AAT50855.1\| PA5485 [synthetic construct]	229.0	[0..5]	[243..23]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYEINLNYP AKNFDKRIRF LVLHYTAKNF EDSLEILTQE AFGVSGHYLI PESSIDGKKQ  60
   61 IFQLVPEKHR AWHAGVSAWQ GRIHLNDTSI GIEIVNLGYQ EEGEKRRWFP FLDYQIELII 120
  121 ELAKDIIERY QLHPTCVVGH SDISPERKAD PGPLFPWKKL YEQGIGAWYE DECKKEMERR 180
  181 LSNETTDIRW LQRHLKTYGY SIEETGELDK KTQQVVCAFQ MHFRPTDYSG IPDKETYAIL 240
  241 YALVKKYFPE KVSSPLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.221849
Match:	2bgxA
Description:	No description for 2bgxA was found.

Predicted functions:

Term	Confidence	Notes
N-acetylmuramoyl-L-alanine amidase activity	5.29207604418857	bayes_pls_golite062009
peptidoglycan binding	5.10635543502728	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.20235326428146	bayes_pls_golite062009
N-acetyl-anhydromuramoyl-L-alanine amidase activity	1.8723848738588	bayes_pls_golite062009
pattern binding	1.3169647365105	bayes_pls_golite062009
hydrolase activity	1.08510134637257	bayes_pls_golite062009
catalytic activity	0.628556091191359	bayes_pls_golite062009
receptor activity	0.165305685738616	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: