YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541617, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541617, gi|....

Description	E-value	Query Range	Subject Range
gi\|13328, gi\|1094719 - gi\|13328\|emb\|CAA35256.1\| mitochondrial cytochrome oxidase subunit II [Petunia x hybrida], gi\|1094719...	264.0	[0..11]	[273..2]
gi\|94492118 - gi\|94492118\|ref\|ZP_01299327.1\| hypothetical protein CburD_01001009 [Coxiella burnetii Dugway 7E9-12] gi\|207081874, gi... - gi\|209363941\|ref\|YP_001424380.2\| cytochrome c oxidase polypeptide II [Coxiella burnetii Dugway 5J108...	263.0	[0..1]	[298..13]
gi\|29468574 - gi\|29468574\|gb\|AAO63465.1\| cytochrome oxidase subunit II [Musca autumnalis]	260.0	[0..25]	[243..1]
gi\|29468576 - gi\|29468576\|gb\|AAO63466.1\| cytochrome oxidase subunit II [Musca domestica]	260.0	[0..25]	[243..1]
gi\|11321195 - gi\|11321195\|gb\|AAG34093.1\|AF295552_2 cytochrome oxidase subunit 2 [Chrysomya norrisi]	259.0	[0..25]	[244..1]
gi\|11321201 - gi\|11321201\|gb\|AAG34097.1\|AF295554_2 cytochrome oxidase subunit 2 [Chrysomya putoria]	258.0	[0..25]	[244..1]
gi\|162279926, gi... - gi\|87248025\|gb\|ABD36067.1\| cytochrome oxidase subunit 2 [Beta vulgaris subsp. vulgaris], gi\|16227992...	258.0	[0..15]	[241..6]
gi\|2687657, gi\|7... - pir\|\|T08042 cytochrome-c oxidase (EC 1.9.3.1) chain II - radish mitochondrion, gi\|2687657\|gb\|AAB8886...	258.0	[0..11]	[241..2]
gi\|11321207 - gi\|11321207\|gb\|AAG34101.1\|AF295556_2 cytochrome oxidase subunit 2 [Chrysomya varipes]	258.0	[0..25]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIIKFLLF VGVLVAGLSL AGCHSLRGGG ILHPEGTVSF EERQLFFDSL ALMLIVVIPV  60
   61 FIMSFTFIVR YRAGHKTSDY QPNWGHSVLL ETIWWGVPCG IIIILGIMTW TLTHKLDPYR 120
  121 RIDTPGKPLL IQAVALPWKW LFIYPEQNFA TVNYLELPKG RQIEFWLTND NVPMSAFFIP 180
  181 ELGSQIYTMA GMRTRLHLVA LKDGNYWGLD TQYNGDGFSD MRFQVKVVEP DELQHWFEKA 240
  241 KQSKEQLTLQ LYQKLIQPSA KDPVRYFSSV APNLFPQIIM KYKQTTGIPT HWAIPQSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	1fftB
Description:	Quinol oxidase (CyoA); Cytochrome O ubiquinol oxidase, subunit II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	3.49954649503756	bayes_pls_golite062009
cytochrome o ubiquinol oxidase activity	2.77451713475463	bayes_pls_golite062009
cation transmembrane transporter activity	0.50535751328003	bayes_pls_golite062009
ion transmembrane transporter activity	0.47291143009364	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.363255055521629	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.33146187552223	bayes_pls_golite062009
substrate-specific transporter activity	0.29656726748788	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.29114952875442	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.23604308872416	bayes_pls_golite062009
transmembrane transporter activity	0.0676065188705399	bayes_pls_golite062009
transporter activity	0.0566019967143101	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: