YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24050222, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24050222, gi|....

Description	E-value	Query Range	Subject Range
gi\|217325171, gi... - gi\|217325171\|ref\|ZP_03441255.1\| signal peptidase II [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|195937700 - gi\|195937700\|ref\|ZP_03083082.1\| lipoprotein signal peptidase [Escherichia coli O157:H7 str. EC4024] gi\|189376019, gi... - gi\|189376019\|gb\|EDU94435.1\| signal peptidase II [Escherichia coli O157:H7 str. EC508], gi\|168801908\|... gi\|254590562, gi... - gi\|254791162\|ref\|YP_003075999.1\| prolipoprotein signal peptidase (signal peptidase II) [Escherichia ... gi\|168785078, gi... - gi\|189375127\|gb\|EDU93543.1\| signal peptidase II [Escherichia coli O157:H7 str. EC869], gi\|168785078\|... gi\|168781724, gi... - gi\|189000670\|gb\|EDU69656.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4076], gi\|168781724... LSPA_ECO5E - Lipoprotein signal peptidase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lspA PE=3 SV=1 gi\|208820735, gi... - gi\|208820735\|ref\|ZP_03261055.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4042], gi\|20874... gi\|208734148, gi... - gi\|208812871\|ref\|ZP_03254200.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208809047, gi... - gi\|208809047\|ref\|ZP_03251384.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|188014307, gi... - gi\|188014307\|gb\|EDU52429.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4113], gi\|168751719... gi\|15829284, gi\|... - gi\|15829284\|ref\|NP_308057.1\| lipoprotein signal peptidase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168776943, gi... - gi\|187767705\|gb\|EDU31549.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4196], gi\|168776943... gi\|168766715, gi... - gi\|189363895\|gb\|EDU82314.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4486], gi\|168766715... gi\|168762787, gi... - gi\|189366973\|gb\|EDU85389.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4501], gi\|168762787... gi\|189356046, gi... - gi\|189356046\|gb\|EDU74465.1\| signal peptidase II [Escherichia coli O157:H7 str. EC4401], gi\|168756851... gi\|15799709, gi\|... - gi\|15799709\|ref\|NP_285721.1\| lipoprotein signal peptidase [Escherichia coli O157:H7 EDL933], gi\|1251... LSPA_ECO57 - Lipoprotein signal peptidase OS=Escherichia coli O157:H7 GN=lspA PE=3 SV=1 gi\|25290083, gi\|... - gi\|25290083\|pir\|\|E85483 signal peptidase II (EC 3.4.23.36) [similarity] - Escherichia coli (strain O...	199.0	[0..1]	[164..1]
LSPA_SHIB3 - Lipoprotein signal peptidase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lspA PE=... gi\|193070980, gi... - gi\|75234162\|ref\|ZP_00718566.1\| COG0597: Lipoprotein signal peptidase [Escherichia coli E110019], gi\|... LSPA_ECOBW - Lipoprotein signal peptidase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=lspA PE=3 SV=1 EG10548 - prolipoprotein signal peptidase (signal peptidase II) / Prolipoprotein signal peptidase, signal pept... LSPA_ECODH - Lipoprotein signal peptidase OS=Escherichia coli (strain K12 / DH10B) GN=lspA PE=3 SV=1 LSPA_SHISS - Lipoprotein signal peptidase OS=Shigella sonnei (strain Ss046) GN=lspA PE=3 SV=1 gi\|89106911, gi\|... - gi\|89106911\|ref\|AP_000691.1\| prolipoprotein signal peptidase [Escherichia coli str. K-12 substr. W31... LSPA_ECOLI - Lipoprotein signal peptidase (EC 3.4.23.36) (Prolipoprotein signal peptidase) (Signal peptidase II) ... EG10548 - prolipoprotein signal peptidase (signal peptidase II) / Prolipoprotein signal peptidase, signal pept...	199.0	[0..1]	[164..1]
gi\|227837908, gi... - gi\|227885079\|ref\|ZP_04002884.1\| lipoprotein signal peptidase [Escherichia coli 83972], gi\|227837908\|... LSPA_ECOSM - Lipoprotein signal peptidase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lspA PE=3 SV=1 LSPA_ECOSE - Lipoprotein signal peptidase OS=Escherichia coli (strain SE11) GN=lspA PE=3 SV=1 LSPA_ECO27 - Lipoprotein signal peptidase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lspA PE=3 SV=1 LSPA_ECO8A - Lipoprotein signal peptidase OS=Escherichia coli O8 (strain IAI1) GN=lspA PE=3 SV=1 sp\|B7UI72\|LSPA_ECO27 - Lipoprotein signal peptidase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lspA PE=3 SV=1 LSPA_ECOK1 - Lipoprotein signal peptidase OS=Escherichia coli O1:K1 / APEC GN=lspA PE=3 SV=1 gi\|124498640, gi... - gi\|124531340\|ref\|ZP_01701668.1\| lipoprotein signal peptidase [Escherichia coli B], gi\|124498640\|gb\|E... LSPA_ECO45 - Lipoprotein signal peptidase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=lspA PE=3 SV=1 LSPA_ECOUT - Lipoprotein signal peptidase OS=Escherichia coli (strain UTI89 / UPEC) GN=lspA PE=3 SV=1 LSPA_ECO81 - Lipoprotein signal peptidase OS=Escherichia coli O81 (strain ED1a) GN=lspA PE=3 SV=1 LSPA_ECOL6 - Lipoprotein signal peptidase OS=Escherichia coli O6 GN=lspA PE=3 SV=1 LSPA_ECO55 - Lipoprotein signal peptidase OS=Escherichia coli (strain 55989 / EAEC) GN=lspA PE=3 SV=1 LSPA_ECO7I - Lipoprotein signal peptidase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=lspA PE=3 SV=1 LSPA_ECOLU - Lipoprotein signal peptidase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lspA PE=3 SV... LSPA_ECOLC - Lipoprotein signal peptidase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lspA PE=3... LSPA_SHIDS - Lipoprotein signal peptidase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lspA PE=3 SV=1 gi\|192926127, gi... - gi\|75255682\|ref\|ZP_00727448.1\| COG0597: Lipoprotein signal peptidase [Escherichia coli E22], gi\|1930... gi\|190901073, gi... - gi\|75227857\|ref\|ZP_00714567.1\| COG0597: Lipoprotein signal peptidase [Escherichia coli B7A], gi\|1911... gi\|194412101, gi... - gi\|75208883\|ref\|ZP_00709160.1\| COG0597: Lipoprotein signal peptidase [Escherichia coli B171], gi\|194... LSPA_ECOHS - Lipoprotein signal peptidase OS=Escherichia coli O9:H4 (strain HS) GN=lspA PE=3 SV=1 LSPA_ECO24 - Lipoprotein signal peptidase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lspA PE=3 SV=1 LSPA_ECOL6 - Lipoprotein signal peptidase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lspA ... gi\|226840548, gi... - gi\|254037442\|ref\|ZP_04871519.1\| signal peptidase II [Escherichia sp. 1_1_43], gi\|226840548\|gb\|EEH725... gi\|226902078, gi... - gi\|237704166\|ref\|ZP_04534647.1\| signal peptidase II [Escherichia sp. 3_2_53FAA], gi\|226902078\|gb\|EEH...	199.0	[0..1]	[164..1]
gi\|75237180, gi\|... - gi\|75237180\|ref\|ZP_00721228.1\| COG0597: Lipoprotein signal peptidase [Escherichia coli F11], gi\|1911... LSPA_ECOL5 - Lipoprotein signal peptidase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lspA PE=3 SV=1 LSPA_ESCF3 - Lipoprotein signal peptidase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)...	198.0	[0..1]	[164..1]
gi\|77976920 - gi\|77976920\|ref\|ZP_00832385.1\| COG0597: Lipoprotein signal peptidase [Yersinia intermedia ATCC 29909...	198.0	[0..1]	[162..1]
LSPA_SHELP - Lipoprotein signal peptidase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=lspA PE=3 SV=1	198.0	[0..1]	[161..1]
LSPA_SHIBS - Lipoprotein signal peptidase OS=Shigella boydii serotype 4 (strain Sb227) GN=lspA PE=3 SV=1	198.0	[0..1]	[164..1]
gi\|75515615, gi\|... - gi\|75515615\|ref\|ZP_00737772.1\| COG0597: Lipoprotein signal peptidase [Escherichia coli 53638], gi\|18... gi\|253325985, gi... - gi\|254286956\|ref\|YP_003052704.1\| signal peptidase II [Escherichia coli BL21(DE3)], gi\|253976263\|gb\|A... gi\|83584929, gi\|... - gi\|83584929\|ref\|ZP_00923586.1\| COG0597: Lipoprotein signal peptidase [Escherichia coli 101-1], gi\|19... gi\|251783594, gi... - gi\|251783594\|ref\|YP_002997898.1\| hypothetical protein B21_00030 [Escherichia coli BL21], gi\|24237586... gi\|253972054, gi... - gi\|254160153\|ref\|YP_003043261.1\| signal peptidase II [Escherichia coli B str. REL606], gi\|253972054\|...	198.0	[0..1]	[164..1]
LSPA_SALTY - Lipoprotein signal peptidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lspA... gi\|168230305, gi... - gi\|205335152\|gb\|EDZ21916.1\| signal peptidase II [Salmonella enterica subsp. enterica serovar Kentuck... gi\|205337430, gi... - gi\|205337430\|gb\|EDZ24194.1\| signal peptidase II [Salmonella enterica subsp. enterica serovar Heidelb... gi\|168464422, gi... - gi\|195632597\|gb\|EDX51051.1\| signal peptidase II [Salmonella enterica subsp. enterica serovar Newport... LSPA_SALNS - Lipoprotein signal peptidase OS=Salmonella newport (strain SL254) GN=lspA PE=3 SV=1 gi\|205331305, gi... - gi\|205331305\|gb\|EDZ18069.1\| signal peptidase II [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|238910801 - gi\|238910801\|ref\|ZP_04654638.1\| lipoprotein signal peptidase [Salmonella enterica subsp. enterica se... LSPA_SALTY - Lipoprotein signal peptidase OS=Salmonella typhimurium GN=lspA PE=3 SV=1 LSPA_SALCH - Lipoprotein signal peptidase OS=Salmonella choleraesuis (strain SC-B67) GN=lspA PE=3 SV=1 LSPA_SALCH - Lipoprotein signal peptidase OS=Salmonella choleraesuis GN=lspA PE=3 SV=1 LSPA_SALCH - Lipoprotein signal peptidase OS=Salmonella choleraesuis GN=lspA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=lspA] [protein=lipoprotein signal peptidase] [protein_id=YP_005235689.1] [location=56689..5718... LSPA_SALEP - Lipoprotein signal peptidase OS=Salmonella enteritidis PT4 (strain P125109) GN=lspA PE=3 SV=1 LSPA_SALPC - Lipoprotein signal peptidase OS=Salmonella paratyphi C (strain RKS4594) GN=lspA PE=3 SV=1 LSPA_SALHS - Lipoprotein signal peptidase OS=Salmonella heidelberg (strain SL476) GN=lspA PE=3 SV=1 LSPA_SALTY - Lipoprotein signal peptidase OS=Salmonella typhimurium GN=lspA PE=3 SV=1 gi\|194457843, gi... - gi\|194471479\|ref\|ZP_03077463.1\| signal peptidase II [Salmonella enterica subsp. enterica serovar Ken... gi\|197264431, gi... - gi\|197264431\|ref\|ZP_03164505.1\| signal peptidase II [Salmonella enterica subsp. enterica serovar Sai... LSPA_SALG2 - Lipoprotein signal peptidase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lspA PE=3 SV=1	198.0	[0..1]	[164..1]
gi\|6630989 - gi\|6630989\|gb\|AAF19640.1\|AF201388_2 prolipoprotein signal peptidase II [Klebsiella pneumoniae]	198.0	[0..1]	[164..1]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSICSTGL RWLWLVVVVL IIDLGSKYLI LQNFALGDTV PLFPSLNLHY ARNYGAAFSF  60
   61 LADSGGWQRW FFAGIAIGIS VLLAVMMYRS KATQKLNNIA YALIIGGALG NLFDRLWHGF 120
  121 VVDMIDFYVG DWHFATFNLA DTAICVGAAL IVLEGFLPSK AKKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	89.468521
Match:	PF01252.9
Description:	No description for PF01252.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits