YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24111548, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24111548, gi|....

Description	E-value	Query Range	Subject Range
gi\|227884993, gi... - gi\|227884993\|ref\|ZP_04002798.1\| dephospho-CoA kinase [Escherichia coli 83972], gi\|227838131\|gb\|EEJ48... COAE_ECOL6 - Dephospho-CoA kinase OS=Escherichia coli O6 GN=coaE PE=3 SV=1 COAE_ECOL6 - Dephospho-CoA kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=coaE PE=3 SV=...	195.0	[0..1]	[206..1]
gi\|78366242, gi\|... - gi\|78366242\|ref\|ZP_00836524.1\| Dephospho-CoA kinase [Shewanella sp. PV-4], gi\|78361830\|gb\|EAP03652.1...	193.0	[0..2]	[200..3]
gi\|238725103, gi... - gi\|77976087\|ref\|ZP_00831620.1\| COG0237: Dephospho-CoA kinase [Yersinia frederiksenii ATCC 33641], gi...	191.0	[0..1]	[198..1]
gi\|88819239, gi\|... - gi\|88859013\|ref\|ZP_01133654.1\| dephospho-CoA kinase [Pseudoalteromonas tunicata D2], gi\|88819239\|gb\|...	191.0	[0..2]	[196..10]
gi\|117622387, gi... - gi\|117622387\|ref\|YP_851300.1\| dephospho-CoA kinase [Escherichia coli APEC O1], gi\|115511511\|gb\|ABI99... gi\|226902163, gi... - gi\|237704251\|ref\|ZP_04534732.1\| dephospho-CoA kinase [Escherichia sp. 3_2_53FAA], gi\|226902163\|gb\|EE... gi\|218363811, gi... - gi\|218557042\|ref\|YP_002389955.1\| dephospho-CoA kinase [Escherichia coli S88], gi\|218363811\|emb\|CAR01... gi\|91209166, gi\|... - gi\|91209166\|ref\|YP_539152.1\| dephospho-CoA kinase [Escherichia coli UTI89], gi\|91070740\|gb\|ABE05621....	191.0	[0..1]	[206..1]
COAE_SHIBS - Dephospho-CoA kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=coaE PE=3 SV=1 gi\|208740991, gi... - gi\|208820868\|ref\|ZP_03261188.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|89106985, gi\|... - gi\|89106985\|ref\|AP_000765.1\| dephospho-CoA kinase [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|208813745, gi... - gi\|208813745\|ref\|ZP_03255074.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4045], gi\|2087... COAE_SHISS - Dephospho-CoA kinase OS=Shigella sonnei (strain Ss046) GN=coaE PE=3 SV=1 gi\|209917295, gi... - gi\|209917295\|ref\|YP_002291379.1\| dephospho-CoA kinase [Escherichia coli SE11], gi\|209910554\|dbj\|BAG7... COAE_SHIDS - Dephospho-CoA kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=coaE PE=3 SV=1 gi\|209398961, gi... - gi\|209398961\|ref\|YP_002268710.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|218687978, gi... - gi\|218687978\|ref\|YP_002396190.1\| dephospho-CoA kinase [Escherichia coli ED1a], gi\|218425542\|emb\|CAR0... gi\|217325369, gi... - gi\|217325369\|ref\|ZP_03441453.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|168789631, gi... - gi\|189370787\|gb\|EDU89203.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC869], gi\|168789631... gi\|83584475, gi\|... - gi\|83584475\|ref\|ZP_00923159.1\| COG0237: Dephospho-CoA kinase [Escherichia coli 101-1], gi\|194440203\|... gi\|189000495, gi... - gi\|189000495\|gb\|EDU69481.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4076], gi\|16878198... gi\|170021542, gi... - gi\|170021542\|ref\|YP_001726496.1\| dephospho-CoA kinase [Escherichia coli ATCC 8739], gi\|169756470\|gb\|... EG12312 - dephospho-CoA kinase / Dephospho-CoA kinase; final step in CoA synthesis gi\|189376414, gi... - gi\|189376414\|gb\|EDU94830.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC508], gi\|168801436... gi\|75226882, gi\|... - gi\|75226882\|ref\|ZP_00713779.1\| COG0237: Dephospho-CoA kinase [Escherichia coli B7A], gi\|191169646\|re... gi\|170521835, gi... - gi\|170684117\|ref\|YP_001742224.1\| dephospho-CoA kinase [Escherichia coli SMS-3-5], gi\|170521835\|gb\|AC... gi\|192931174, gi... - gi\|75258903\|ref\|ZP_00730293.1\| COG0237: Dephospho-CoA kinase [Escherichia coli E22], gi\|193063266\|re... gi\|169887576, gi... - gi\|170079741\|ref\|YP_001729061.1\| dephospho-CoA kinase [Escherichia coli str. K-12 substr. DH10B], gi... gi\|157156454, gi... - gi\|75189202\|ref\|ZP_00702469.1\| COG0237: Dephospho-CoA kinase [Escherichia coli E24377A], gi\|15715645... gi\|208727302, gi... - gi\|208807501\|ref\|ZP_03249838.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|157065253, gi... - gi\|75194319\|ref\|ZP_00704389.1\| COG0237: Dephospho-CoA kinase [Escherichia coli HS], gi\|157159573\|ref... gi\|195938216 - gi\|195938216\|ref\|ZP_03083598.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4024] gi\|15829361, gi\|... - gi\|15829361\|ref\|NP_308134.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. Sakai], gi\|13359563... gi\|238899503, gi... - gi\|238899503\|ref\|YP_002925299.1\| dephospho-CoA kinase [Escherichia coli BW2952], gi\|238860749\|gb\|ACR... COAE_ECOLI - Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase) - Escherichia coli gi\|242375938, gi... - gi\|251783665\|ref\|YP_002997969.1\| hypothetical protein B21_00102 [Escherichia coli BL21], gi\|24237593... gi\|254287027, gi... - gi\|254287027\|ref\|YP_003052775.1\| dephospho-CoA kinase [Escherichia coli BL21(DE3)], gi\|253976334\|gb\|... gi\|253972125, gi... - gi\|254160224\|ref\|YP_003043332.1\| dephospho-CoA kinase [Escherichia coli B str. REL606], gi\|253972125... gi\|254590639, gi... - gi\|254791239\|ref\|YP_003076076.1\| putative DNA repair protein [Escherichia coli O157:H7 str. TW14359]... COAE_ECO57 - Dephospho-CoA kinase OS=Escherichia coli O157:H7 GN=coaE PE=3 SV=1 gi\|12512809, gi\|... - gi\|15799787\|ref\|NP_285799.1\| dephospho-CoA kinase [Escherichia coli O157:H7 EDL933], gi\|12512809\|gb\|... EG12312 - dephospho-CoA kinase / Dephospho-CoA kinase; final step in CoA synthesis gi\|168764864, gi... - gi\|189365211\|gb\|EDU83627.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4501], gi\|16876486... gi\|168755712, gi... - gi\|189356995\|gb\|EDU75414.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4401], gi\|16875571... gi\|168776811, gi... - gi\|187767839\|gb\|EDU31683.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4196], gi\|16877681... gi\|189360727, gi... - gi\|189360727\|gb\|EDU79146.1\| dephospho-CoA kinase [Escherichia coli O157:H7 str. EC4486], gi\|16877043... gi\|124499093, gi... - gi\|124530566\|ref\|ZP_01701169.1\| dephospho-CoA kinase [Escherichia coli B], gi\|124499093\|gb\|EAY46588....	191.0	[0..1]	[206..1]
gi\|191174236, gi... - gi\|75236905\|ref\|ZP_00720967.1\| COG0237: Dephospho-CoA kinase [Escherichia coli F11], gi\|191174236\|re... gi\|110341907, gi... - gi\|110640315\|ref\|YP_668043.1\| dephospho-CoA kinase [Escherichia coli 536], gi\|110341907\|gb\|ABG68144....	191.0	[0..1]	[206..1]
gi\|75511979, gi\|... - gi\|75511979\|ref\|ZP_00734574.1\| COG0237: Dephospho-CoA kinase [Escherichia coli 53638], gi\|188494165\|...	190.0	[0..1]	[206..1]
gi\|75233831, gi\|... - gi\|75233831\|ref\|ZP_00718301.1\| COG0237: Dephospho-CoA kinase [Escherichia coli E110019], gi\|19307123... gi\|218359452, gi... - gi\|218552684\|ref\|YP_002385597.1\| dephospho-CoA kinase [Escherichia coli IAI1], gi\|218359452\|emb\|CAQ9... gi\|218350302, gi... - gi\|218693570\|ref\|YP_002401237.1\| dephospho-CoA kinase [Escherichia coli 55989], gi\|218350302\|emb\|CAU...	190.0	[0..1]	[206..1]
gi\|40890023, gi\|... - gi\|40890023\|pdb\|1VIY\|C Chain C, Crystal Structure Of Dephospho-Coa Kinase, gi\|40890022\|pdb\|1VIY\|B Ch...	190.0	[0..3]	[206..5]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYIVALTGG IGSGKSTVAN AFADLGINVI DADIIARQVV EPGAPALHAI ADHFGENMIA  60
   61 ADGTLQRRAL RERIFANPEE KNWLNDLLHP LIQQETQHQI QQATSPYVLW VVPLLVENSL 120
  121 YKKANRVLVV DVSPETQLKR TMQRDDVTRE HVEQILAAQA TREARLAVAD DVIDNNGAPD 180
  181 AIASDVARLH AHYLQLASQF VSQEKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1n3bA
Description:	Dephospho-CoA kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009
dephospho-CoA kinase activity	0.656417599253142	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: