YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24050504, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24050504, gi|....

Description	E-value	Query Range	Subject Range
gi\|168782994, gi... - gi\|188999609\|gb\|EDU68595.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168776127, gi... - gi\|187768424\|gb\|EDU32268.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168770031, gi... - gi\|189361023\|gb\|EDU79442.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189366366, gi... - gi\|189366366\|gb\|EDU84782.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|208806737, gi... - gi\|208806737\|ref\|ZP_03249074.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195938636 - gi\|195938636\|ref\|ZP_03084018.1\| putative toxin YafO [Escherichia coli O157:H7 str. EC4024] gi\|168800329, gi... - gi\|189377326\|gb\|EDU95742.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168789706, gi... - gi\|189370734\|gb\|EDU89150.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|254590793, gi... - gi\|254791393\|ref\|YP_003076230.1\| predicted toxin of the YafO-YafN toxin-antitoxin system [Escherichi... gi\|189355705, gi... - gi\|189355705\|gb\|EDU74124.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188015584, gi... - gi\|188015584\|gb\|EDU53706.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|217321281, gi... - gi\|217325060\|ref\|ZP_03441144.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209398666, gi... - gi\|209398666\|ref\|YP_002268860.1\| hypothetical protein ECH74115_0278 [Escherichia coli O157:H7 str. E... gi\|208820754, gi... - gi\|208820754\|ref\|ZP_03261074.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|15829514, gi\|... - gi\|15829514\|ref\|NP_308287.1\| putative toxin YafO [Escherichia coli O157:H7 str. Sakai], gi\|13359717\|... gi\|208814003, gi... - gi\|208814003\|ref\|ZP_03255332.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|15829514, gi\|... - gi\|15829514\|ref\|NP_308287.1\| hypothetical protein ECs0260 [Escherichia coli O157:H7], gi\|13359717\|db... gi\|209745348, gi... - pir\|\|B85512 hypothetical protein yafO [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15799938, gi\|... - gi\|15799938\|ref\|NP_285950.1\| putative toxin YafO [Escherichia coli O157:H7 EDL933], gi\|12513004\|gb\|A...	249.0	[0..1]	[132..1]
gi\|254160347, gi... - gi\|254160347\|ref\|YP_003043455.1\| predicted toxin of the YafO-YafN toxin-antitoxin system [Escherichi... gi\|253325786, gi... - gi\|254287150\|ref\|YP_003052898.1\| predicted toxin of the YafO-YafN toxin-antitoxin system [Escherichi... gi\|75513580, gi\|... - gi\|75513580\|ref\|ZP_00735971.1\| hypothetical protein Ecol5_01002313 [Escherichia coli 53638], gi\|1884... gi\|194438232, gi... - gi\|83586311\|ref\|ZP_00924946.1\| hypothetical protein Ecol1_01002438 [Escherichia coli 101-1], gi\|1944...	247.0	[0..1]	[132..1]
EG13152 - mRNA interferase toxin of the YafO-YafN toxin-antitoxin system / mRNA interferase, toxin-antitoxin p... gi\|984589, gi\|89... - gi\|984589\|dbj\|BAA07595.1\| YafO [Escherichia coli W3110], gi\|89107106\|ref\|AP_000886.1\| predicted toxi... EG13152 - mRNA interferase toxin of the YafO-YafN toxin-antitoxin system / mRNA interferase, toxin-antitoxin p... gi\|169887695, gi... - gi\|170079860\|ref\|YP_001729180.1\| toxin of the YafO-YafN toxin-antitoxin system [Escherichia coli str... YAFO_ECOLI - Hypothetical protein yafO - Escherichia coli gi\|238899623, gi... - gi\|238899623\|ref\|YP_002925419.1\| putative toxin of the YafO-YafN toxin-antitoxin system [Escherichia...	246.0	[0..1]	[132..1]
gi\|237707748, gi... - gi\|237707748\|ref\|ZP_04538229.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218557189, gi... - gi\|218557189\|ref\|YP_002390102.1\| putative toxin YafO [Escherichia coli S88], gi\|218363958\|emb\|CAR016... gi\|110342061, gi... - gi\|110640469\|ref\|YP_668197.1\| putative toxin YafO [Escherichia coli 536], gi\|110342061\|gb\|ABG68298.1... gi\|115511659, gi... - gi\|117622535\|ref\|YP_851448.1\| putative toxin YafO [Escherichia coli APEC O1], gi\|115511659\|gb\|ABI997... gi\|91209321, gi\|... - gi\|91209321\|ref\|YP_539307.1\| putative toxin YafO [Escherichia coli UTI89], gi\|91070895\|gb\|ABE05776.1... gi\|190908336, gi... - gi\|75241695\|ref\|ZP_00725532.1\| hypothetical protein EcolF_01001403 [Escherichia coli F11], gi\|191171...	245.0	[0..1]	[132..1]
gi\|59889803 - gi\|59889803\|emb\|CAH19159.1\| Hypothetical protein (pseudogene) [Escherichia coli]	241.0	[0..1]	[132..1]
gi\|36786470, gi\|... - gi\|37527037\|ref\|NP_930381.1\| putative toxin YafO [Photorhabdus luminescens subsp. laumondii TTO1], g...	202.0	[0..1]	[132..2]
gi\|83646537, gi\|... - gi\|83646537\|ref\|YP_434972.1\| putative toxin YafO [Hahella chejuensis KCTC 2396], gi\|83634580\|gb\|ABC3...	135.0	[0..1]	[129..6]
gi\|56461624, gi\|... - gi\|56461624\|ref\|YP_156905.1\| putative toxin YafO [Idiomarina loihiensis L2TR], gi\|56180634\|gb\|AAV833...	120.0	[0..1]	[132..2]
gi\|117624541, gi... - gi\|117624541\|ref\|YP_853454.1\| hypothetical protein APECO1_4213 [Escherichia coli APEC O1], gi\|115513... gi\|218559265, gi... - gi\|218559265\|ref\|YP_002392178.1\| hypothetical protein ECS88_2503 [Escherichia coli S88], gi\|21836603...	69.0	[0..19]	[129..28]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVFKTKLIR LQLTAEELDA LTADFISYKR DGVLPDIFGR DALYDDSFTW PLIKFERVAH  60
   61 IHLANVNNPF PPQLRQFSRT NDEAHLVYCQ GAFDEQAWLL IAILKPEPHK LARDNNQMHK 120
  121 IGKMAEAFRM RF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits