YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30061946, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30061946, gi|....

Description	E-value	Query Range	Subject Range
QUEC_ECOBW - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=queC PE=3 SV=1 gi\|89107314, gi\|... - gi\|89107314\|ref\|AP_001094.1\| predicted aluminum resistance protein [Escherichia coli str. K-12 subst... QUEC_ECOLI, YBAX... - (P77756) Hypothetical protein ybaX, Queuosine biosynthesis protein queC - Escherichia coli QUEC_ECODH - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain K12 / DH10B) GN=queC PE=3 SV=1 EG13252 - 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis / 7-cyano-7-deazaguanine (preQ0) syn... EG13252 - 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis / 7-cyano-7-deazaguanine (preQ0) syn...	210.0	[0..1]	[231..1]
gi\|194416322, gi... - gi\|194435436\|ref\|ZP_03067614.1\| queuosine biosynthesis protein QueC [Shigella dysenteriae 1012], gi\|... gi\|227838631, gi... - gi\|227884545\|ref\|ZP_04002350.1\| transcriptional regulator [Escherichia coli 83972], gi\|227838631\|gb\|... gi\|226898771, gi... - gi\|237707561\|ref\|ZP_04538042.1\| queuosine biosynthesis protein queC [Escherichia sp. 3_2_53FAA], gi\|... QUEC_ECOL6 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qu... QUEC_ECOL5 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=queC PE=3 SV=1 QUEC_ECOL6 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O6 GN=queC PE=3 SV=1 QUEC_ECOUT - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=queC PE=3 SV=1 gi\|190906037, gi... - gi\|75238197\|ref\|ZP_00722198.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli F11],... QUEC_ECO81 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O81 (strain ED1a) GN=queC PE=3 SV=1 QUEC_ECO45 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=queC PE=3 SV=1 QUEC_ECOLU - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=queC PE=3... QUEC_ECO7I - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=queC PE=3 SV=1 QUEC_ECOK1 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O1:K1 / APEC GN=queC PE=3 SV=1	209.0	[0..1]	[231..1]
QUEC_SHIF8 - 7-cyano-7-deazaguanine synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=queC PE=3 SV=1	208.0	[0..1]	[231..1]
QUEC_SHIDS - 7-cyano-7-deazaguanine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=queC PE=3 SV=1	207.0	[0..1]	[231..1]
QUEC_SALCH - 7-cyano-7-deazaguanine synthase OS=Salmonella choleraesuis (strain SC-B67) GN=queC PE=3 SV=2 QUEC_SALCH - Queuosine biosynthesis protein queC OS=Salmonella choleraesuis GN=queC PE=3 SV=2 QUEC_SALCH - 7-cyano-7-deazaguanine synthase OS=Salmonella choleraesuis GN=queC PE=3 SV=2 QUEC_SALPC - 7-cyano-7-deazaguanine synthase OS=Salmonella paratyphi C (strain RKS4594) GN=queC PE=3 SV=1	207.0	[0..1]	[231..1]
gi\|208805824, gi... - gi\|208805824\|ref\|ZP_03248161.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. E... gi\|208816134, gi... - gi\|208816134\|ref\|ZP_03257313.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. E... gi\|208823253, gi... - gi\|208823253\|ref\|ZP_03263571.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. E... QUEC_ECO5E - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=queC PE=3 SV=1 gi\|209778644, gi... - pir\|\|F85541 hypothetical protein ybaX [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168778937, gi... - gi\|189003020\|gb\|EDU72006.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. EC407... gi\|189373665, gi... - gi\|189373665\|gb\|EDU92081.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. EC869... gi\|15800174, gi\|... - gi\|15800174\|ref\|NP_286186.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 EDL933], ... gi\|189379336, gi... - gi\|189379336\|gb\|EDU97752.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. EC508... QUEC_ECO57 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O157:H7 GN=queC PE=3 SV=1 gi\|195936008 - gi\|195936008\|ref\|ZP_03081390.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. E... gi\|168754549, gi... - gi\|189357982\|gb\|EDU76401.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. EC440... gi\|168760401, gi... - gi\|189369159\|gb\|EDU87575.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. EC450... gi\|254591028, gi... - gi\|254791628\|ref\|YP_003076465.1\| enzyme in preQ0 biosynthesis [Escherichia coli O157:H7 str. TW14359... gi\|189362373, gi... - gi\|189362373\|gb\|EDU80792.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. EC448... gi\|168777140, gi... - gi\|187767546\|gb\|EDU31390.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. EC419... gi\|188017662, gi... - gi\|188017662\|gb\|EDU55784.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. EC411... gi\|13359955, gi\|... - gi\|15829752\|ref\|NP_308525.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. Saka... gi\|217321473, gi... - gi\|217325252\|ref\|ZP_03441336.1\| queuosine biosynthesis protein QueC [Escherichia coli O157:H7 str. T...	207.0	[0..1]	[231..1]
gi\|62179067, gi\|... - gi\|62179067\|ref\|YP_215484.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. enteric...	207.0	[0..1]	[231..36]
lcl\|NC_016856.1_... - [gene=ybaX] [protein=queuosine biosynthesis protein QueC] [protein_id=YP_005236153.1] [location=comp... QUEC_SALTI - 7-cyano-7-deazaguanine synthase OS=Salmonella typhi GN=queC PE=3 SV=1 gi\|16759435 - gi\|16759435\|ref\|NP_455052.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. enteric... gi\|213850131 - gi\|213850131\|ref\|ZP_03381029.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. ente... gi\|214002814 - gi\|214002814\|ref\|ZP_03413549.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. ente... QUEC_SALTY - 7-cyano-7-deazaguanine synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=q... gi\|29142793, gi\|... - gi\|29142793\|ref\|NP_806135.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. enteric... QUEC_SALTI - Queuosine biosynthesis protein queC OS=Salmonella typhi GN=queC PE=3 SV=1 gi\|213425849 - gi\|213425849\|ref\|ZP_03358599.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. ente... QUEC_SALTY - Queuosine biosynthesis protein queC OS=Salmonella typhimurium GN=queC PE=3 SV=1 gi\|213586412 - gi\|213586412\|ref\|ZP_03368238.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. ente... gi\|213612961 - gi\|213612961\|ref\|ZP_03370787.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. ente... gi\|213645998 - gi\|213645998\|ref\|ZP_03376051.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. ente... gi\|199603548, gi... - gi\|200391103\|ref\|ZP_03217714.1\| ExsB protein [Salmonella enterica subsp. enterica serovar Virchow st... QUEC_SALEP - 7-cyano-7-deazaguanine synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=queC PE=3 SV=1 gi\|213027386 - gi\|213027386\|ref\|ZP_03341833.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. ente... gi\|213160787 - gi\|213160787\|ref\|ZP_03346497.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. ente... gi\|194458593, gi... - gi\|194472229\|ref\|ZP_03078213.1\| ExsB protein [Salmonella enterica subsp. enterica serovar Kentucky s... QUEC_SALA4 - 7-cyano-7-deazaguanine synthase OS=Salmonella agona (strain SL483) GN=queC PE=3 SV=1 gi\|197241156, gi... - gi\|197262901\|ref\|ZP_03162975.1\| ExsB protein [Salmonella enterica subsp. enterica serovar Saintpaul ... QUEC_SALDC - 7-cyano-7-deazaguanine synthase OS=Salmonella dublin (strain CT_02021853) GN=queC PE=3 SV=1 QUEC_SALTY - 7-cyano-7-deazaguanine synthase OS=Salmonella typhimurium GN=queC PE=3 SV=1 gi\|205330946, gi... - gi\|205330946\|gb\|EDZ17710.1\| ExsB protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205333976, gi... - gi\|205333976\|gb\|EDZ20740.1\| ExsB protein [Salmonella enterica subsp. enterica serovar Kentucky str. ...	207.0	[0..1]	[231..1]
gi\|254287318, gi... - gi\|254287318\|ref\|YP_003053066.1\| predicted aluminum resistance protein [Escherichia coli BL21(DE3)],... gi\|251783953, gi... - gi\|251783953\|ref\|YP_002998257.1\| hypothetical protein B21_00400 [Escherichia coli BL21], gi\|24237622... QUEC_ECO8A - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O8 (strain IAI1) GN=queC PE=3 SV=1 gi\|254160514, gi... - gi\|254160514\|ref\|YP_003043622.1\| predicted aluminum resistance protein [Escherichia coli B str. REL6... QUEC_ECOLC - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=queC P... gi\|124531653, gi... - gi\|124531653\|ref\|ZP_01701841.1\| exsB protein [Escherichia coli B], gi\|124498431\|gb\|EAY45944.1\| exsB ... gi\|194437541, gi... - gi\|83587100\|ref\|ZP_00925730.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli 101-1...	207.0	[0..1]	[231..1]
QUEC_SALPK - 7-cyano-7-deazaguanine synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=queC PE=3 SV=1 QUEC_SALPA - 7-cyano-7-deazaguanine synthase OS=Salmonella paratyphi A GN=queC PE=3 SV=1 QUEC_SALPA - 7-cyano-7-deazaguanine synthase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=queC PE=3 S...	205.0	[0..1]	[231..1]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRAVVVFSG GQDSTTCLVQ ALQQYDEVHC VTFDYGQRHR AEIDVARELA LKLGARAHKV  60
   61 LDVTLLNELA VSSLTRDSIP VPDYEPEADG IPNTFVPGRN ILFLTLAAIY AYQVKAEAVI 120
  121 TGVCETDFSG YPDCRDEFVK ALNHAVSLGM AKDIRFETPL MWIDKAETWA LADYYGKLDL 180
  181 VRNETLTCYN GIKGDGCGHC AACNLRANGL NHYLADKPTV MAAMKQKTGL R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	2pg3A
Description:	No description for 2pg3A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.432879758487135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: