YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30041258, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30041258, gi|....

Description	E-value	Query Range	Subject Range
gi\|189404092, gi... - gi\|189404092\|ref\|ZP_02787218.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|189403441, gi... - gi\|189403441\|ref\|ZP_02795493.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|189377587, gi... - gi\|189405911\|ref\|ZP_02825101.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|189405093, gi... - gi\|189405093\|ref\|ZP_02813128.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|208724916, gi... - gi\|208810400\|ref\|ZP_03252276.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195937408 - gi\|195937408\|ref\|ZP_03082790.1\| hypothetical protein EscherichcoliO157_13322 [Escherichia coli O157:... gi\|208738953, gi... - gi\|208818830\|ref\|ZP_03259150.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|13361897, gi\|... - gi\|15831684\|ref\|NP_310457.1\| hypothetical protein ECs2430 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208816609, gi... - gi\|208816609\|ref\|ZP_03257729.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|170081381, gi... - gi\|170081381\|ref\|YP_001730701.1\| hypothetical protein ECDH10B_1862 [Escherichia coli str. K-12 subst... gi\|170019929, gi... - gi\|170019929\|ref\|YP_001724883.1\| hypothetical protein EcolC_1908 [Escherichia coli ATCC 8739], gi\|16... gi\|188016312, gi... - gi\|188024858\|ref\|ZP_02774481.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|187776037, gi... - gi\|187776037\|ref\|ZP_02799981.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... gi\|189356213, gi... - gi\|189402341\|ref\|ZP_02781733.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189000269, gi... - gi\|189010439\|ref\|ZP_02807147.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... EG13985 - uncharacterized protein / Function unknown gi\|209919084, gi... - gi\|209919084\|ref\|YP_002293168.1\| hypothetical protein ECSE_1893 [Escherichia coli SE11], gi\|20991234... gi\|209396496, gi... - gi\|209396496\|ref\|YP_002270794.1\| hypothetical protein ECH74115_2442 [Escherichia coli O157:H7 str. E... gi\|218361058, gi... - gi\|218554290\|ref\|YP_002387203.1\| hypothetical protein ECIAI1_1782 [Escherichia coli IAI1], gi\|218361... gi\|217318392, gi... - gi\|217329045\|ref\|ZP_03445126.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218352015, gi... - gi\|218695283\|ref\|YP_002402950.1\| hypothetical protein EC55989_1891 [Escherichia coli 55989], gi\|2183... gi\|238862987, gi... - gi\|238900938\|ref\|YP_002926734.1\| hypothetical protein BWG_1537 [Escherichia coli BW2952], gi\|2388629... gi\|251785173, gi... - gi\|251785173\|ref\|YP_002999477.1\| hypothetical protein B21_01681 [Escherichia coli BL21], gi\|24237744... gi\|253324366, gi... - gi\|254288571\|ref\|YP_003054319.1\| hypothetical protein ECD_01693 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973684, gi... - gi\|254161783\|ref\|YP_003044891.1\| hypothetical protein ECB_01693 [Escherichia coli B str. REL606], gi... gi\|254793342, gi... - gi\|254793342\|ref\|YP_003078179.1\| hypothetical protein ECSP_2292 [Escherichia coli O157:H7 str. TW143... YDIZ_ECOLI - Hypothetical protein ydiZ - Escherichia coli EG13985 - uncharacterized protein / Function unknown YDIZ_ECO57 - Uncharacterized protein YdiZ OS=Escherichia coli O157:H7 GN=ydiZ PE=4 SV=1 gi\|81245282, gi\|... - gi\|82543871\|ref\|YP_407818.1\| hypothetical protein SBO_1366 [Shigella boydii Sb227], gi\|81245282\|gb\|A... gi\|85675092, gi\|... - gi\|89108563\|ref\|AP_002343.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|74311956, gi\|... - gi\|74311956\|ref\|YP_310375.1\| hypothetical protein SSON_1433 [Shigella sonnei Ss046], gi\|73855433\|gb\|... gi\|82777070, gi\|... - gi\|82777070\|ref\|YP_403419.1\| hypothetical protein SDY_1817 [Shigella dysenteriae Sd197], gi\|81241218... gi\|124499549, gi... - gi\|124529996\|ref\|ZP_01700808.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499549\|gb... gi\|187733790, gi... - gi\|75177349\|ref\|ZP_00697438.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Shigella boydii ... gi\|75190758, gi\|... - gi\|75190758\|ref\|ZP_00704025.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|83586024, gi\|... - gi\|83586024\|ref\|ZP_00924662.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|193068948, gi... - gi\|75236806\|ref\|ZP_00720877.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|75256127, gi\|... - gi\|75256127\|ref\|ZP_00727823.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|75195794, gi\|... - gi\|75195794\|ref\|ZP_00705864.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|194428564, gi... - gi\|75210209\|ref\|ZP_00710377.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli...	165.0	[0..1]	[96..1]
gi\|91210939, gi\|... - gi\|91210939\|ref\|YP_540925.1\| hypothetical protein UTI89_C1918 [Escherichia coli UTI89], gi\|91072513\|... gi\|115513021, gi... - gi\|117623897\|ref\|YP_852810.1\| hypothetical protein APECO1_794 [Escherichia coli APEC O1], gi\|1155130... gi\|218705222, gi... - gi\|218705222\|ref\|YP_002412741.1\| hypothetical protein ECUMN_2013 [Escherichia coli UMN026], gi\|21843... gi\|237705673, gi... - gi\|237705673\|ref\|ZP_04536154.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|170518633, gi... - gi\|170680915\|ref\|YP_001743525.1\| hypothetical protein EcSMS35_1467 [Escherichia coli SMS-3-5], gi\|17... gi\|215265014, gi... - gi\|215486942\|ref\|YP_002329373.1\| hypothetical protein E2348C_1853 [Escherichia coli O127:H6 str. E23... gi\|218558593, gi... - gi\|218558593\|ref\|YP_002391506.1\| hypothetical protein ECS88_1776 [Escherichia coli S88], gi\|21836536... gi\|218427230, gi... - gi\|218689666\|ref\|YP_002397878.1\| hypothetical protein ECED1_1927 [Escherichia coli ED1a], gi\|2184272...	164.0	[0..1]	[96..1]
gi\|25496390 - gi\|25496390\|pir\|\|B85781 hypothetical protein Z2753 [imported] - Escherichia coli (strain O157:H7, s... gi\|12515737, gi\|... - gi\|15802135\|ref\|NP_288157.1\| hypothetical protein Z2753 [Escherichia coli O157:H7 EDL933], gi\|125157...	164.0	[0..1]	[96..1]
gi\|190900939, gi... - gi\|75227714\|ref\|ZP_00714449.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli...	163.0	[0..1]	[96..1]
gi\|110641845, gi... - gi\|110641845\|ref\|YP_669575.1\| hypothetical protein ECP_1671 [Escherichia coli 536], gi\|110343437\|gb\|... gi\|191171770, gi... - gi\|75241400\|ref\|ZP_00725251.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|227837425, gi... - gi\|227885852\|ref\|ZP_04003657.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783742... gi\|26108380, gi\|... - gi\|26247977\|ref\|NP_754017.1\| hypothetical protein c2123 [Escherichia coli CFT073], gi\|26108380\|gb\|AA...	163.0	[0..1]	[96..1]
gi\|168821972, gi... - gi\|205341552\|gb\|EDZ28316.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|62127549, gi\|... - gi\|62179916\|ref\|YP_216333.1\| hypothetical protein SC1346 [Salmonella enterica subsp. enterica serova... gi\|194404767, gi... - gi\|194446104\|ref\|YP_002040585.1\| hypothetical protein SNSL254_A1439 [Salmonella enterica subsp. ente... gi\|194449558, gi... - gi\|194449558\|ref\|YP_002045333.1\| hypothetical protein SeHA_C1454 [Salmonella enterica subsp. enteric... gi\|238910856 - gi\|238910856\|ref\|ZP_04654693.1\| hypothetical protein SentesTe_06942 [Salmonella enterica subsp. ente... gi\|197250998, gi... - gi\|197250998\|ref\|YP_002146710.1\| hypothetical protein SeAg_B1846 [Salmonella enterica subsp. enteric... gi\|29137298, gi\|... - gi\|29141670\|ref\|NP_805012.1\| hypothetical protein t1205 [Salmonella enterica subsp. enterica serovar... gi\|16760569 - gi\|16760569\|ref\|NP_456186.1\| hypothetical protein STY1786 [Salmonella enterica subsp. enterica serov... gi\|167552317, gi... - gi\|205322984\|gb\|EDZ10823.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205336787, gi... - gi\|205336787\|gb\|EDZ23551.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|25512036, gi\|... - gi\|25512036\|pir\|\|AC0707 conserved hypothetical protein STY1786 [imported] - Salmonella enterica subs... gi\|168263854, gi... - gi\|205347537\|gb\|EDZ34168.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213618834 - gi\|213618834\|ref\|ZP_03372660.1\| hypothetical protein SentesTyp_21165 [Salmonella enterica subsp. ent... gi\|213650307 - gi\|213650307\|ref\|ZP_03380360.1\| hypothetical protein SentesTy_25511 [Salmonella enterica subsp. ente... gi\|213865018 - gi\|213865018\|ref\|ZP_03387137.1\| hypothetical protein SentesT_34790 [Salmonella enterica subsp. enter... gi\|214001284 - gi\|214001284\|ref\|ZP_03412019.1\| hypothetical protein Salmonellentericaenterica_12600 [Salmonella ent... gi\|213027328 - gi\|213027328\|ref\|ZP_03341775.1\| hypothetical protein Salmonelentericaenterica_35019 [Salmonella ente... gi\|213163062 - gi\|213163062\|ref\|ZP_03348772.1\| hypothetical protein Salmoneentericaenterica_24778 [Salmonella enter... gi\|213426338 - gi\|213426338\|ref\|ZP_03359088.1\| hypothetical protein SentesTyphi_12299 [Salmonella enterica subsp. e... gi\|213583607 - gi\|213583607\|ref\|ZP_03365433.1\| hypothetical protein SentesTyph_21285 [Salmonella enterica subsp. en... gi\|198244559, gi... - gi\|198244559\|ref\|YP_002215799.1\| hypothetical protein SeD_A2019 [Salmonella enterica subsp. enterica... gi\|204927820, gi... - gi\|204927820\|ref\|ZP_03219021.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205352950, gi... - gi\|205352950\|ref\|YP_002226751.1\| hypothetical protein SG1791 [Salmonella enterica subsp. enterica se... gi\|206708969, gi... - gi\|207857166\|ref\|YP_002243817.1\| hypothetical protein SEN1718 [Salmonella enterica subsp. enterica s...	162.0	[0..1]	[94..1]
lcl\|NC_016856.1_... - [gene=ydiZ] [protein=putative cytoplasmic protein] [protein_id=YP_005237184.1] [location=complement(... gi\|205329775, gi... - gi\|205329775\|gb\|EDZ16539.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|16764676, gi\|... - gi\|16764676\|ref\|NP_460291.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16419843\|... gi\|197264177, gi... - gi\|197264177\|ref\|ZP_03164251.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se...	160.0	[0..1]	[94..1]
gi\|197362612, gi... - gi\|197362612\|ref\|YP_002142249.1\| hypothetical protein SSPA1410 [Salmonella enterica subsp. enterica ... gi\|56413689, gi\|... - gi\|56413689\|ref\|YP_150764.1\| hypothetical protein SPA1519 [Salmonella enterica subsp. enterica serov...	159.0	[0..1]	[94..1]
gi\|75513779 - gi\|75513779\|ref\|ZP_00736155.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli...	146.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGDLVHYV ITVMLHEDTL TEINELNNYL TRDGFLLTMT DDEGNIHELG TNTFGLISTQ  60
   61 SEEEIRELVS GLTQSATGKD PEITITTWEE WNSNRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.916	c.30.1	PreATP-grasp domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits