YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24051982, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24051982, gi|....

Description	E-value	Query Range	Subject Range
gi\|36785710, gi\|... - gi\|37526279\|ref\|NP_929623.1\| electron transport complex protein RnfB [Photorhabdus luminescens subsp...	149.0	[0..1]	[190..1]
RNFB_SALTI - Electron transport complex protein rnfB OS=Salmonella typhi GN=rnfB PE=3 SV=1 gi\|29137413, gi\|... - gi\|29141785\|ref\|NP_805127.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ent... gi\|168229833, gi... - gi\|205335259\|gb\|EDZ22023.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella enteri... gi\|16760455 - gi\|16760455\|ref\|NP_456072.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ent... gi\|205323557, gi... - gi\|205323557\|gb\|EDZ11396.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella enteri... RSXB_SALTI - Electron transport complex subunit RsxB OS=Salmonella typhi GN=rsxB PE=3 SV=1 RSXB_SALSV - Electron transport complex subunit RsxB OS=Salmonella schwarzengrund (strain CVM19633) GN=rsxB PE=3 ... RNFB_SALCH - Electron transport complex protein rnfB OS=Salmonella choleraesuis GN=rnfB PE=3 SV=1 RNFB_SALPA - Electron transport complex protein rnfB OS=Salmonella paratyphi A GN=rnfB PE=3 SV=1 gi\|194470589, gi... - gi\|194470589\|ref\|ZP_03076573.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella en... RNFB_SALCH - Electron transport complex protein rnfB OS=Salmonella choleraesuis GN=rnfB PE=3 SV=1 gi\|205343637, gi... - gi\|205343637\|gb\|EDZ30401.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella enteri... gi\|197290969, gi... - gi\|197290969\|gb\|EDY30322.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella enteri... gi\|213855036 - gi\|213855036\|ref\|ZP_03383276.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ... RSXB_SALCH - Electron transport complex subunit RsxB OS=Salmonella choleraesuis (strain SC-B67) GN=rsxB PE=3 SV=1 gi\|213649167 - gi\|213649167\|ref\|ZP_03379220.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ... RSXB_SALPA - Electron transport complex subunit RsxB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rsx... gi\|213609896 - gi\|213609896\|ref\|ZP_03369722.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ... gi\|213425980 - gi\|213425980\|ref\|ZP_03358730.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ... RSXB_SALPC - Electron transport complex subunit RsxB OS=Salmonella paratyphi C (strain RKS4594) GN=rsxB PE=3 SV=1 gi\|214000273 - gi\|214000273\|ref\|ZP_03411008.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ... gi\|204322824, gi... - gi\|204927482\|ref\|ZP_03218683.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella en... gi\|200390591, gi... - gi\|200390591\|ref\|ZP_03217202.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella en... RSXB_SALPK - Electron transport complex subunit RsxB OS=Salmonella paratyphi A (strain AKU_12601) GN=rsxB PE=3 SV... RSXB_SALA4 - Electron transport complex subunit RsxB OS=Salmonella agona (strain SL483) GN=rsxB PE=3 SV=1 gi\|213418458 - gi\|213418458\|ref\|ZP_03351524.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ... gi\|213051628 - gi\|213051628\|ref\|ZP_03344506.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ... RSXB_SALEP - Electron transport complex subunit RsxB OS=Salmonella enteritidis PT4 (strain P125109) GN=rsxB PE=3 ... RSXB_SALG2 - Electron transport complex subunit RsxB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rsx... gi\|238911690 - gi\|238911690\|ref\|ZP_04655527.1\| electron transport complex protein RnfB [Salmonella enterica subsp. ...	149.0	[0..1]	[192..1]
gi\|197244175, gi... - gi\|197265920\|ref\|ZP_03165994.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella en... RSXB_SALHS - Electron transport complex subunit RsxB OS=Salmonella heidelberg (strain SL476) GN=rsxB PE=3 SV=1 gi\|168264619, gi... - gi\|205346940\|gb\|EDZ33571.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella enteri... RNFB_SALTY - Electron transport complex protein rnfB OS=Salmonella typhimurium GN=rnfB PE=3 SV=1 gi\|205339698, gi... - gi\|205339698\|gb\|EDZ26462.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella enteri... RNFB_SALPB - Electron transport complex protein rnfB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=r... RSXB_SALTY - Electron transport complex subunit RsxB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... RSXB_SALDC - Electron transport complex subunit RsxB OS=Salmonella dublin (strain CT_02021853) GN=rsxB PE=3 SV=1 gi\|205327845, gi... - gi\|205327845\|gb\|EDZ14609.1\| electron transport complex, RnfABCDGE type, B subunit [Salmonella enteri... RNFB_SALTY - Electron transport complex protein rnfB OS=Salmonella typhimurium GN=rnfB PE=3 SV=1 RSXB_SALPB - Electron transport complex subunit RsxB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=r... lcl\|NC_016856.1_... - [gene=ydgM] [protein=electron transport complex protein RnfB] [protein_id=YP_005237329.1] [location=...	148.0	[0..1]	[192..1]
RSXB_ECOUT - Electron transport complex subunit RsxB OS=Escherichia coli (strain UTI89 / UPEC) GN=rsxB PE=3 SV=1 RSXB_ECO57 - Electron transport complex subunit RsxB OS=Escherichia coli O157:H7 GN=rsxB PE=3 SV=1 gi\|194415943, gi... - gi\|75212965\|ref\|ZP_00712963.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... gi\|208740661, gi... - gi\|208820538\|ref\|ZP_03260858.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... gi\|190904047, gi... - gi\|75230923\|ref\|ZP_00717372.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... RSXB_ECO5E - Electron transport complex subunit RsxB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rsxB P... RSXB_ECOSE - Electron transport complex subunit RsxB OS=Escherichia coli (strain SE11) GN=rsxB PE=3 SV=1 RSXB_ECO24 - Electron transport complex subunit RsxB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rsxB... gi\|217328786, gi... - gi\|217328786\|ref\|ZP_03444867.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... RSXB_SHISS - Electron transport complex subunit RsxB OS=Shigella sonnei (strain Ss046) GN=rsxB PE=3 SV=1 gi\|15831591, gi\|... - gi\|15831591\|ref\|NP_310364.1\| electron transport complex protein RnfB [Escherichia coli O157:H7 str. ... RSXB_ECO45 - Electron transport complex subunit RsxB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rsxB PE=3... RSXB_ECO55 - Electron transport complex subunit RsxB OS=Escherichia coli (strain 55989 / EAEC) GN=rsxB PE=3 SV=1 gi\|75238811, gi\|... - gi\|75238811\|ref\|ZP_00722795.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... RSXB_ECO7I - Electron transport complex subunit RsxB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rsxB PE=... gi\|193064973, gi... - gi\|75257047\|ref\|ZP_00728607.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... gi\|254592645, gi... - gi\|254793245\|ref\|YP_003078082.1\| inner membrane iron-sulfur protein in SoxR-reducing complex [Escher... gi\|226900328, gi... - gi\|237705571\|ref\|ZP_04536052.1\| electron transport complex protein rnfB [Escherichia sp. 3_2_53FAA],... gi\|209769658, gi... - pir\|\|A99921 Electron transport complex protein rnfB - Escherichia coli (strain O157:H7, substrain R... RSXB_ECOK1 - Electron transport complex subunit RsxB OS=Escherichia coli O1:K1 / APEC GN=rsxB PE=3 SV=1 gi\|187768706, gi... - gi\|187768706\|gb\|EDU32550.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|188999203, gi... - gi\|188999203\|gb\|EDU68189.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|189370933, gi... - gi\|189370933\|gb\|EDU89349.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|168800888, gi... - gi\|189376873\|gb\|EDU95289.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... RSXB_ECOSM - Electron transport complex subunit RsxB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rsxB PE=3 SV... gi\|195939017 - gi\|195939017\|ref\|ZP_03084399.1\| electron transport complex protein RnfB [Escherichia coli O157:H7 st... gi\|208725066, gi... - gi\|208810550\|ref\|ZP_03252426.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... gi\|208731121, gi... - gi\|208816778\|ref\|ZP_03257898.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... gi\|168750558, gi... - gi\|188015258\|gb\|EDU53380.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|189355528, gi... - gi\|189355528\|gb\|EDU73947.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|189366182, gi... - gi\|189366182\|gb\|EDU84598.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|189359994, gi... - gi\|189359994\|gb\|EDU78413.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ...	148.0	[0..1]	[192..1]
gi\|251785086, gi... - gi\|251785086\|ref\|YP_002999390.1\| hypothetical protein B21_01588 [Escherichia coli BL21], gi\|24237735... gi\|254288479, gi... - gi\|254288479\|ref\|YP_003054227.1\| electron transport complex protein RnfB [Escherichia coli BL21(DE3)... gi\|253973591, gi... - gi\|254161690\|ref\|YP_003044798.1\| electron transport complex protein RnfB [Escherichia coli B str. RE... EG13934 - SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein / SoxR iron-sulfur... RNFB_ECOLI - Electron transport complex protein rnfB - Escherichia coli gi\|124499989, gi... - gi\|124529215\|ref\|ZP_01700290.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... RSXB_ECOLC - Electron transport complex subunit RsxB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) G... RSXB_ECODH - Electron transport complex subunit RsxB OS=Escherichia coli (strain K12 / DH10B) GN=rsxB PE=3 SV=1 gi\|89108470, gi\|... - gi\|89108470\|ref\|AP_002250.1\| predicted iron-sulfur protein [Escherichia coli str. K-12 substr. W3110... RSXB_ECO8A - Electron transport complex subunit RsxB OS=Escherichia coli O8 (strain IAI1) GN=rsxB PE=3 SV=1 gi\|194431902, gi... - gi\|83571014\|ref\|ZP_00922456.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Shig... gi\|194424684, gi... - gi\|83587963\|ref\|ZP_00926589.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... RSXB_ECOHS - Electron transport complex subunit RsxB OS=Escherichia coli O9:H4 (strain HS) GN=rsxB PE=3 SV=1 gi\|75234941, gi\|... - gi\|75234941\|ref\|ZP_00719220.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... EG13934 - SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein / SoxR iron-sulfur... RSXB_ECOBW - Electron transport complex subunit RsxB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rsxB P...	148.0	[0..1]	[192..1]
RSXB_SHIB3 - Electron transport complex subunit RsxB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ...	147.0	[0..1]	[192..1]
RSXB_ECOL5 - Electron transport complex subunit RsxB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rsxB P...	147.0	[0..1]	[192..1]
gi\|25316768 - gi\|25316768\|pir\|\|E85769 hypothetical protein Z2634 [imported] - Escherichia coli (strain O157:H7, s... gi\|12515617, gi\|... - gi\|15802042\|ref\|NP_288064.1\| electron transport complex protein RnfB [Escherichia coli O157:H7 EDL93...	147.0	[0..1]	[192..1]
RSXB_SHIDS - Electron transport complex subunit RsxB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rsxB PE...	147.0	[0..1]	[192..1]
RSXB_ECOL6 - Electron transport complex subunit RsxB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... RNFB_ECOL6 - Electron transport complex protein rnfB OS=Escherichia coli O6 GN=rnfB PE=3 SV=1 gi\|227885956, gi... - gi\|227885956\|ref\|ZP_04003761.1\| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972], gi\|2278370...	147.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAIWIAVAA VSLLGLAFGA ILGYASRRFA VEDDPVVEKI DEILPQSQCG QCGYPGCRPY  60
   61 AEAISCNGEK INRCAPGGEA VMLKIAELLN VEPQPLDGEA QELTPARMVA VIDENNCIGC 120
  121 TKCIQACPVD AIVGATRVMH TVMSDLCTGC NLCVDPCPTH CISLQPVAET PDSWKWDLNT 180
  181 IPVRIIPVEH HA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1kqfB
Description:	Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits