YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30064421, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30064421, gi|....

Description	E-value	Query Range	Subject Range
gi\|227887802, gi... - gi\|227887802\|ref\|ZP_04005607.1\| cryptic beta-D-galactosidase, beta subunit [Escherichia coli 83972],... EBGC_ECOL6 - Evolved beta-galactosidase subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... EG10253 - evolved beta-D-galactosidase, beta subunit; cupin superfamily / Evolved beta-D-galactosidase, beta s... EBGC_ECOL6 - Evolved beta-galactosidase subunit beta OS=Escherichia coli O6 GN=ebgC PE=3 SV=1 gi\|117625388, gi... - gi\|117625388\|ref\|YP_858711.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli APEC O1], ... gi\|124502117, gi... - gi\|124526013\|ref\|ZP_01698018.1\| conserved hypothetical protein 22 [Escherichia coli B], gi\|124502117... gi\|75513290, gi\|... - gi\|75513290\|ref\|ZP_00735714.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli 53638], g... gi\|215488407, gi... - gi\|215488407\|ref\|YP_002330838.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli O127:H6... gi\|74313613, gi\|... - gi\|74313613\|ref\|YP_312032.1\| cryptic beta-D-galactosidase subunit beta [Shigella sonnei Ss046], gi\|7... gi\|218555646, gi... - gi\|218555646\|ref\|YP_002388559.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli IAI1], ... gi\|75240892, gi\|... - gi\|75240892\|ref\|ZP_00724790.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli F11], gi\|... gi\|218560163, gi... - gi\|218560163\|ref\|YP_002393076.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli S88], g... gi\|75260009, gi\|... - gi\|75260009\|ref\|ZP_00731287.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E22], gi\|... gi\|218691381, gi... - gi\|218691381\|ref\|YP_002399593.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli ED1a], ... gi\|218353513, gi... - gi\|218696781\|ref\|YP_002404448.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli 55989],... gi\|218701850, gi... - gi\|218701850\|ref\|YP_002409479.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli IAI39],... gi\|89109846, gi\|... - gi\|89109846\|ref\|AP_003626.1\| cryptic beta-D-galactosidase, beta subunit [Escherichia coli str. K-12 ... gi\|218433798, gi... - gi\|218706701\|ref\|YP_002414220.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli UMN026]... gi\|91212508, gi\|... - gi\|91212508\|ref\|YP_542494.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli UTI89], gi\|... gi\|194421264, gi... - gi\|83584800\|ref\|ZP_00923461.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli 101-1], g... gi\|110643321, gi... - gi\|110643321\|ref\|YP_671051.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli 536], gi\|1... gi\|194414194, gi... - gi\|75211030\|ref\|ZP_00711143.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli B171], gi... gi\|169753600, gi... - gi\|170018672\|ref\|YP_001723626.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli ATCC 87... gi\|169890454, gi... - gi\|170082619\|ref\|YP_001731939.1\| cryptic beta-D-galactosidase, beta subunit [Escherichia coli str. K... gi\|75230006, gi\|... - gi\|75230006\|ref\|ZP_00716519.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli B7A], gi\|... gi\|157155641, gi... - gi\|75187886\|ref\|ZP_00701153.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E24377A],... gi\|194420148, gi... - gi\|194431792\|ref\|ZP_03064083.1\| evolved beta-galactosidase, beta subunit [Shigella dysenteriae 1012]... gi\|75197030, gi\|... - gi\|75197030\|ref\|ZP_00707100.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli HS], gi\|1... gi\|209913808, gi... - gi\|209920549\|ref\|YP_002294633.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli SE11], ... EBGC_ECOLI - Evolved beta-galactosidase subunit beta - Escherichia coli EG10253 - evolved beta-D-galactosidase, beta subunit; cupin superfamily / Evolved beta-D-galactosidase, beta s... gi\|253974924, gi... - gi\|254163023\|ref\|YP_003046131.1\| cryptic beta-D-galactosidase, beta subunit [Escherichia coli B str.... gi\|226839870, gi... - gi\|254038246\|ref\|ZP_04872304.1\| beta-D-galactosidase [Escherichia sp. 1_1_43], gi\|226839870\|gb\|EEH71... gi\|253323132, gi... - gi\|254289773\|ref\|YP_003055521.1\| cryptic beta-D-galactosidase, beta subunit [Escherichia coli BL21(D... gi\|242378626, gi... - gi\|251786353\|ref\|YP_003000657.1\| hypothetical protein B21_02896 [Escherichia coli BL21], gi\|24237862... gi\|238902187, gi... - gi\|238902187\|ref\|YP_002927983.1\| cryptic beta-D-galactosidase, beta subunit [Escherichia coli BW2952... gi\|237706160, gi... - gi\|237706160\|ref\|ZP_04536641.1\| evolved beta-galactosidase beta-subunit [Escherichia sp. 3_2_53FAA],...	191.0	[0..1]	[149..1]
gi\|81246743, gi\|... - gi\|82545332\|ref\|YP_409279.1\| cryptic beta-D-galactosidase subunit beta [Shigella boydii Sb227], gi\|8... gi\|110616509, gi... - gi\|110806961\|ref\|YP_690481.1\| cryptic beta-D-galactosidase subunit beta [Shigella flexneri 5 str. 84...	191.0	[0..1]	[149..1]
gi\|189367590, gi... - gi\|189367590\|gb\|EDU86006.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|189358522, gi... - gi\|189358522\|gb\|EDU76941.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|188016385, gi... - gi\|188016385\|gb\|EDU54507.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|168785955, gi... - gi\|189374063\|gb\|EDU92479.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|13363432, gi\|... - gi\|15833213\|ref\|NP_311986.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli O157:H7 str... gi\|168781215, gi... - gi\|189001119\|gb\|EDU70105.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|187770795, gi... - gi\|187770795\|gb\|EDU34639.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|189361486, gi... - gi\|189361486\|gb\|EDU79905.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|13363432, gi\|... - gi\|15833213\|ref\|NP_311986.1\| evolved beta-D-galactosidase beta subunit [Escherichia coli O157:H7], g... gi\|209759150, gi... - pir\|\|F85968 evolved beta-D-galactosidase beta subunit [imported] - Escherichia coli (strain O157:H7,... gi\|12517661, gi\|... - gi\|15803618\|ref\|NP_289651.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli O157:H7 EDL... gi\|254594428, gi... - gi\|254795028\|ref\|YP_003079865.1\| cryptic beta-D-galactosidase, beta subunit [Escherichia coli O157:H... gi\|208814339, gi... - gi\|208814339\|ref\|ZP_03255668.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 s... gi\|208726113, gi... - gi\|208806312\|ref\|ZP_03248649.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 s... gi\|195937223 - gi\|195937223\|ref\|ZP_03082605.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli O157:H7 ... gi\|168797672, gi... - gi\|189379686\|gb\|EDU98102.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|217326970, gi... - gi\|217326970\|ref\|ZP_03443053.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 s... gi\|209162244, gi... - gi\|209400844\|ref\|YP_002272550.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 ... gi\|208819889, gi... - gi\|208819889\|ref\|ZP_03260209.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 s...	190.0	[0..1]	[149..1]
gi\|192959389, gi... - gi\|75239353\|ref\|ZP_00723324.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E110019],...	187.0	[0..1]	[149..1]
gi\|145822, gi\|41310 - gi\|41310\|emb\|CAA36275.1\| unnamed protein product [Escherichia coli], gi\|145822\|gb\|AAA61972.1\| EGB en...	182.0	[0..1]	[143..1]
gi\|37680827, gi\|... - gi\|37680827\|ref\|NP_935436.1\| cryptic beta-D-galactosidase subunit beta [Vibrio vulnificus YJ016], gi...	180.0	[0..1]	[149..1]
gi\|27361268, gi\|... - gi\|27365122\|ref\|NP_760650.1\| cryptic beta-D-galactosidase subunit beta [Vibrio vulnificus CMCP6], gi...	179.0	[0..1]	[149..1]
gi\|116185256, gi... - gi\|75855901\|ref\|ZP_00763540.1\| COG2731: Beta-galactosidase, beta subunit [Vibrio sp. Ex25], gi\|11618...	173.0	[0..1]	[149..1]
gi\|28899178, gi\|... - gi\|28899178\|ref\|NP_798783.1\| cryptic beta-D-galactosidase subunit beta [Vibrio parahaemolyticus RIMD... gi\|28807402 - gi\|28807402\|dbj\|BAC60667.1\| evolved beta-D-galactosidase, beta subunit; cryptic gene [Vibrio parahae...	170.0	[0..1]	[149..1]
gi\|90410460, gi\|... - gi\|90410460\|ref\|ZP_01218476.1\| putative evolved beta-D-galactosidase, beta subunit; cryptic protein ...	168.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIIDNLEQF RQIYASGKKW QRCVEAIENI DNIQPGVAHS IGDSLTYRVE NDSATDALFT  60
   61 GHRRYFEVHY YLQGQQKIEY APKETLQVVE YYRDETDREY LKGCGETVEV HEGQIVICDI 120
  121 HEAYRFICNN AVKKVVLKVT IEDGYFHNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	1jopA
Description:	Hypothetical protein HI0227
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.391261742890951	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: