YRC Public Data Repository - Protein Structure Prediction

Protein:	TABA_SHIFL
Organism:	Shigella flexneri
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TABA_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|16505576, gi\|... - gi\|25302798\|pir\|\|AC1060 conserved hypothetical protein STY4806 [imported] - Salmonella enterica subs... gi\|16763268 - gi\|16763268\|ref\|NP_458885.1\| hypothetical protein STY4806 [Salmonella enterica subsp. enterica serov... gi\|29140386, gi\|... - gi\|29144747\|ref\|NP_808089.1\| hypothetical protein t4502 [Salmonella enterica subsp. enterica serovar... gi\|213427646 - gi\|213427646\|ref\|ZP_03360396.1\| hypothetical protein SentesTyphi_19892 [Salmonella enterica subsp. e... gi\|213585893 - gi\|213585893\|ref\|ZP_03367719.1\| hypothetical protein SentesTyph_33347 [Salmonella enterica subsp. en... gi\|213646814 - gi\|213646814\|ref\|ZP_03376867.1\| hypothetical protein SentesTy_05580 [Salmonella enterica subsp. ente... gi\|214000036 - gi\|214000036\|ref\|ZP_03410771.1\| hypothetical protein Salmonellentericaenterica_04927 [Salmonella ent... gi\|213161551 - gi\|213161551\|ref\|ZP_03347261.1\| hypothetical protein Salmoneentericaenterica_16642 [Salmonella enter...	208.0	[0..1]	[150..1]
gi\|62130526, gi\|... - gi\|62182893\|ref\|YP_219310.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov... gi\|224586292, gi... - gi\|224586292\|ref\|YP_002640091.1\| hypothetical protein SPC_4601 [Salmonella enterica subsp. enterica ... gi\|168464651, gi... - gi\|195632851\|gb\|EDX51305.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161617761, gi... - gi\|161617761\|ref\|YP_001591727.1\| hypothetical protein SPAB_05624 [Salmonella enterica subsp. enteric...	208.0	[0..1]	[150..1]
lcl\|NC_016856.1_... - [gene=yjgK] [protein=putative cytoplasmic protein] [protein_id=YP_005240792.1] [location=4724054..47... gi\|16767713, gi\|... - gi\|16767713\|ref\|NP_463328.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16423032\|... gi\|205330395, gi... - gi\|205330395\|gb\|EDZ17159.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova...	206.0	[0..1]	[150..1]
gi\|197365162, gi... - gi\|197365162\|ref\|YP_002144799.1\| hypothetical protein SSPA3965 [Salmonella enterica subsp. enterica ... gi\|56130496, gi\|... - gi\|56416239\|ref\|YP_153314.1\| hypothetical protein SPA4268 [Salmonella enterica subsp. enterica serov...	204.0	[0..1]	[150..1]
gi\|81243461, gi\|... - gi\|82779313\|ref\|YP_405662.1\| hypothetical protein SDY_4270 [Shigella dysenteriae Sd197], gi\|81243461...	202.0	[0..1]	[150..4]
gi\|83569378, gi\|... - gi\|83569378\|ref\|ZP_00920832.1\| COG2731: Beta-galactosidase, beta subunit [Shigella dysenteriae 1012]...	201.0	[0..1]	[150..1]
gi\|38704249 - gi\|38704249\|ref\|NP_313256.2\| hypothetical protein ECs5229 [Escherichia coli O157:H7] gi\|75235442, gi\|... - gi\|75235442\|ref\|ZP_00719650.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E110019],... gi\|157077271, gi... - gi\|75188963\|ref\|ZP_00702230.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E24377A],... gi\|124500753, gi... - gi\|124528311\|ref\|ZP_01699635.1\| conserved hypothetical protein 22 [Escherichia coli B], gi\|124500753... gi\|75515486, gi\|... - gi\|75515486\|ref\|ZP_00737643.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli 53638], g... gi\|192930615, gi... - gi\|75258351\|ref\|ZP_00729782.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E22], gi\|... gi\|188014806, gi... - gi\|188014806\|gb\|EDU52928.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189357928, gi... - gi\|189357928\|gb\|EDU76347.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168774028, gi... - gi\|187770229\|gb\|EDU34073.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168782777, gi... - gi\|188999803\|gb\|EDU68789.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189368954, gi... - gi\|189368954\|gb\|EDU87370.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189363899, gi... - gi\|189363899\|gb\|EDU82318.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|38704249 - gi\|38704249\|ref\|NP_313256.2\| hypothetical protein ECs5229 [Escherichia coli O157:H7 str. Sakai] gi\|83586722, gi\|... - gi\|83586722\|ref\|ZP_00925354.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli 101-1], g... gi\|218363569, gi... - gi\|218556800\|ref\|YP_002389714.1\| hypothetical protein ECIAI1_4481 [Escherichia coli IAI1], gi\|218363... gi\|218698001, gi... - gi\|218698001\|ref\|YP_002405668.1\| hypothetical protein EC55989_4809 [Escherichia coli 55989], gi\|2183... gi\|209915007, gi... - gi\|209921748\|ref\|YP_002295832.1\| hypothetical protein ECSE_4557 [Escherichia coli SE11], gi\|20991500... gi\|217321735, gi... - gi\|217325514\|ref\|ZP_03441598.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218434956, gi... - gi\|218707859\|ref\|YP_002415378.1\| hypothetical protein ECUMN_4782 [Escherichia coli UMN026], gi\|21843... gi\|254796272, gi... - gi\|254796272\|ref\|YP_003081109.1\| hypothetical protein ECSP_5353 [Escherichia coli O157:H7 str. TW143... gi\|170021739, gi... - gi\|170021739\|ref\|YP_001726693.1\| hypothetical protein EcolC_3761 [Escherichia coli ATCC 8739], gi\|16... gi\|195937277 - gi\|195937277\|ref\|ZP_03082659.1\| hypothetical protein EscherichcoliO157_12630 [Escherichia coli O157:... gi\|189374781, gi... - gi\|189374781\|gb\|EDU93197.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379558, gi... - gi\|189379558\|gb\|EDU97974.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208739463, gi... - gi\|208819340\|ref\|ZP_03259660.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209399615, gi... - gi\|209399615\|ref\|YP_002273796.1\| hypothetical protein ECH74115_5773 [Escherichia coli O157:H7 str. E... gi\|208726292, gi... - gi\|208806491\|ref\|ZP_03248828.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208813165, gi... - gi\|208813165\|ref\|ZP_03254494.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045...	201.0	[0..1]	[150..1]
gi\|75212196, gi\|... - gi\|75212196\|ref\|ZP_00712236.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli B171], gi... gi\|75179350, gi\|... - gi\|75179350\|ref\|ZP_00699354.1\| COG2731: Beta-galactosidase, beta subunit [Shigella boydii BS512], gi...	201.0	[0..1]	[150..1]
gi\|13364707 - gi\|13364707\|dbj\|BAB38652.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|209749530, gi... - pir\|\|G86123 hypothetical protein yjgK [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15804844, gi\|... - gi\|15804844\|ref\|NP_290885.1\| hypothetical protein Z5864 [Escherichia coli O157:H7 EDL933], gi\|125192... gi\|13364707 - gi\|13364707\|dbj\|BAB38652.1\| hypothetical protein [Escherichia coli O157:H7] gi\|226840380, gi... - gi\|254037274\|ref\|ZP_04871351.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684038...	201.0	[0..1]	[150..4]
gi\|81247913, gi\|... - gi\|82546502\|ref\|YP_410449.1\| hypothetical protein SBO_4195 [Shigella boydii Sb227], gi\|81247913\|gb\|A...	201.0	[0..1]	[150..4]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIGNIHNLQ PWLPQELRQA IEHIKAHVTA ETPKGKHDIE GNRLFYLISE DMTEPYEARR  60
   61 AEYHARYLDI QIVLKGQEGM TFSTQPAGAP DTDWLADKDI AFLPEGVDEK TVILNEGDFV 120
  121 VFYPGEVHKP LCAVGAPAQV RKAVVKMLMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1jopA
Description:	Hypothetical protein HI0227
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits