YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33632937, gi\|...
Organism:	Synechococcus sp. WH 8102
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33632937, gi|....

Description	E-value	Query Range	Subject Range
gi\|33634921, gi\|... - gi\|33863004\|ref\|NP_894564.1\| putative ATP adenylyltransferase [Prochlorococcus marinus str. MIT 9313...	261.0	[0..1]	[281..1]
gi\|17133602, gi\|... - gi\|17231958\|ref\|NP_488506.1\| Ap4A phosphorylase II [Nostoc sp. PCC 7120], gi\|17133602\|dbj\|BAB76165.1... gi\|25530194 - pir\|\|AB2364 Ap4A phosphorylase II [imported] - Nostoc sp. (strain PCC 7120)	252.0	[0..1]	[281..10]
gi\|33240411, gi\|... - gi\|33240411\|ref\|NP_875353.1\| putative ATP adenylyltransferase [Prochlorococcus marinus subsp. marinu...	247.0	[0..1]	[280..1]
gi\|75703260, gi\|... - gi\|75909535\|ref\|YP_323831.1\| Ap4A phosphorylase II [Anabaena variabilis ATCC 29413], gi\|75703260\|gb\|...	246.0	[0..1]	[281..10]
gi\|33634008, gi\|... - gi\|33861431\|ref\|NP_892992.1\| putative ATP adenylyltransferase [Prochlorococcus marinus subsp. pastor...	243.0	[0..1]	[279..1]
gi\|53687949 - gi\|53687949\|ref\|ZP_00345508.1\| COG4360: ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phos...	241.0	[0..1]	[281..10]
gi\|48891692, gi\|... - gi\|71678064\|ref\|ZP_00675794.1\| similar to ATP adenylyltransferase (5' 5'''-P-1 P-4-tetraphosphate ph...	232.0	[0..1]	[280..8]
gi\|78779310, gi\|... - gi\|78779310\|ref\|YP_397422.1\| putative ATP adenylyltransferase [Prochlorococcus marinus str. MIT 9312...	226.0	[0..1]	[279..1]
gi\|113953442, gi... - gi\|113953442\|ref\|YP_730553.1\| ATP adenylyltransferase [Synechococcus sp. CC9311], gi\|113880793\|gb\|AB...	224.0	[0..1]	[280..1]
gi\|78184702, gi\|... - gi\|78184702\|ref\|YP_377137.1\| ATP adenylyltransferase [Synechococcus sp. CC9902], gi\|78168996\|gb\|ABB2...	223.0	[0..1]	[282..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAEGLHKLA LQHSQEALEN GALRPLSTDI ETWAGSGDGG FEIRHLVGAP PRHLREAGPK  60
   61 PNPFRPWDQR LELTRVGNEH VLILNKYPVQ LGHMLLISQS WQPQVGWLSL LDWTAVCQVN 120
  121 RDTGGLWFFN SGPQAGASQP HRHLQLLPRT KGVRLCPREE WFQQHLLNAT CSRPMDSLER 180
  181 SI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1emsA
Description:	NIT-FHIT fusion protein, C-terminal domain; NIT-FHIT fusion protein, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [183-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIKPLPVTWS GSALLEIYLD LCQQSGLGSP QRDEKPLHPY NLLISTRWMT LVKRSCDEVH  60
   61 GYSVNALGFA GYLLSTERSN RTWLAAHSPE ALLMKVVATD P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.657	N/A	N/A	a.242.1	Description not found.
View	Download	0.654	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.622	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.557	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.553	N/A	N/A	a.280.1	Description not found.
View	Download	0.370	N/A	N/A	a.142.1	PTS-regulatory domain, PRD
View	Download	0.314	N/A	N/A	a.60.13	Putative methyltransferase TM0872, insert domain
View	Download	0.280	N/A	N/A	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits