YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34556597
Organism:	Wolinella succinogenes DSM 1740
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34556597.

Description	E-value	Query Range	Subject Range
FLAG_VIBPA - Protein FlaG OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=flaG PE=4 SV=2 FLAG_VIBPA - Protein flaG OS=Vibrio parahaemolyticus GN=flaG PE=4 SV=2	112.0	[0..2]	[126..10]
gi\|109646090, gi... - gi\|68205548\|ref\|ZP_00557749.1\| Flagellar protein FlaG protein [Desulfitobacterium hafniense DCB-2], ...	112.0	[0..14]	[127..13]
gi\|22778188, gi\|... - gi\|23099957\|ref\|NP_693423.1\| flagellar protein FlaG [Oceanobacillus iheyensis HTE831], gi\|22778188\|d...	111.0	[0..6]	[127..4]
gi\|551514 - gi\|551514\|gb\|AAC27802.1\| FlaG [Vibrio parahaemolyticus] gi\|153837009, gi... - gi\|153837009\|ref\|ZP_01989676.1\| FlaG [Vibrio parahaemolyticus AQ3810], gi\|149749782\|gb\|EDM60527.1\| F...	111.0	[0..2]	[126..10]
tr\|Q884Y6\|Q884Y6... - Flagellin FlaG, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1950 PE=4 SV=1 gi\|28869154, gi\|... - gi\|28869154\|ref\|NP_791773.1\| flagellin FlaG, putative [Pseudomonas syringae pv. tomato str. DC3000],...	109.0	[0..7]	[127..10]
gi\|63257401, gi\|... - gi\|66046694\|ref\|YP_236535.1\| flagellar protein FlaG protein [Pseudomonas syringae pv. syringae B728a...	109.0	[0..11]	[127..12]
gi\|71736592, gi\|... - gi\|71736592\|ref\|YP_275549.1\| flagellin FlaG [Pseudomonas syringae pv. phaseolicola 1448A], gi\|715571... gi\|38175045 - gi\|38175045\|dbj\|BAD01156.1\| putative flagellin FlaG protein [Pseudomonas syringae pv. glycinea] gi\|49205104 - gi\|49205104\|dbj\|BAD24671.1\| FlaG [Pseudomonas syringae pv. tabaci]	108.0	[0..7]	[127..10]
gi\|32266288, gi\|... - gi\|32266288\|ref\|NP_860320.1\| flagellar protein FlaG [Helicobacter hepaticus ATCC 51449], gi\|32262338...	106.0	[0..4]	[128..1]
gi\|15616177, gi\|... - gi\|15616177\|ref\|NP_244482.1\| flagellar protein FlaG [Bacillus halodurans C-125], gi\|10176239\|dbj\|BAB... gi\|25487634 - pir\|\|G84101 flagellar protein BH3615 [imported] - Bacillus halodurans (strain C-125)	105.0	[0..21]	[127..3]
gi\|37199423, gi\|... - gi\|37680674\|ref\|NP_935283.1\| flagellar protein FlaG [Vibrio vulnificus YJ016], gi\|37199423\|dbj\|BAC95... gi\|27365272, gi\|... - gi\|27365272\|ref\|NP_760800.1\| flagellar protein FlaG [Vibrio vulnificus CMCP6], gi\|27361419\|gb\|AAO103...	104.0	[0..2]	[126..10]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEMIGQTGA ITTTPATGAL VNTSKGEGAG VASSSTQQIQ KEVQELQDSK NVEDLKKELM  60
   61 QLTEELNREF NPLNMNIKFG FSDDIESLYV TVSERDSNRL IRKIPSDEAI ELMVKMREIV 120
  121 GIIFDKKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	2hc5A
Description:	No description for 2hc5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits