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View Structure Prediction Details

Protein: gi|34483785
Organism: Wolinella succinogenes
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34483785.

Description E-value Query
Range
Subject
Range
gi|32265683, gi|... - gi|32265683|ref|NP_859715.1| flagellar basal body rod modification protein [Helicobacter hepaticus A...
209.0 [0..1] [269..1]

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Predicted Domain #1
Region A:
Residues: [1-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATITNTNST STYTSSSDVA QNNNGTLDKD AFMRLFLEQL KSQDPTSPME TEKILEQTAM  60
   61 LTQLEQQEEM KKTLSSMTDT MKTMTDTSTK LAELQETMSN TLKDLGTSLD NSTSVTTFLA 120
  121 QLAGYNSVGM IGKVAETNVT GLNITSNDAV KFDLYFDEPI DASKGTPMLK IYNEKNELIK 180
  181 EVDLSAYNGQ KGYVTFEWDT KDSGGSYVAN GAYNVTAEYN LDSATNKYKE TRIGRGEVQS 240
  241 ILYENSVPYV KLGDNLILPI GNVTQFYEKG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 1xf1A
Description: Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle