YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995235, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995235, gi|....

Description	E-value	Query Range	Subject Range
gi\|85859102, gi\|... - gi\|85859102\|ref\|YP_461304.1\| amidophosphoribosyltransferase family protein [Syntrophus aciditrophicu...	175.0	[0..2]	[236..4]
gi\|48844571, gi\|... - gi\|78224524\|ref\|YP_386271.1\| phosphoribosyltransferase [Geobacter metallireducens GS-15], gi\|7819577...	169.0	[0..2]	[238..3]
gi\|83592076, gi\|... - gi\|83592076\|ref\|YP_425828.1\| phosphoribosyltransferase [Rhodospirillum rubrum ATCC 11170], gi\|835749...	165.0	[0..2]	[236..8]
gi\|20806995, gi\|... - gi\|20806995\|ref\|NP_622166.1\| amidophosphoribosyltransferase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806995 - gi\|20806995\|ref\|NP_622166.1\| predicted amidophosphoribosyltransferase [Thermoanaerobacter tengcongen... gi\|214035204, gi... - gi\|254478842\|ref\|ZP_05092207.1\| Phosphoribosyl transferase domain protein [Carboxydibrachium pacific...	163.0	[0..6]	[235..3]
gi\|114539102, gi... - gi\|114704317\|ref\|ZP_01437225.1\| hypothetical protein FP2506_05271 [Fulvimarina pelagi HTCC2506], gi\|...	162.0	[0..2]	[236..11]
gi\|58697413, gi\|... - gi\|58697413\|ref\|ZP_00372723.1\| competence protein F, interruption-N [Wolbachia endosymbiont of Droso... gi\|225630605, gi... - gi\|225630605\|ref\|YP_002727396.1\| putative competence protein F [Wolbachia sp. wRi], gi\|225592586\|gb\|...	161.0	[0..1]	[237..4]
gi\|75830644, gi\|... - gi\|75830644\|ref\|ZP_00759918.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae M... gi\|75815860 - gi\|75815860\|ref\|ZP_00746350.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae V... gi\|75827962 - gi\|75827962\|ref\|ZP_00757397.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae O...	159.0	[0..3]	[238..35]
gi\|46201247 - gi\|46201247\|ref\|ZP_00208026.1\| COG1040: Predicted amidophosphoribosyltransferases [Magnetospirillum ...	158.0	[0..2]	[236..107]
gi\|116221312, gi... - gi\|75820619\|ref\|ZP_00750662.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae V...	158.0	[0..3]	[238..35]
gi\|229353320, gi... - gi\|229509846\|ref\|ZP_04399327.1\| hypothetical protein VCE_001248 [Vibrio cholerae B33], gi\|229353320\|... gi\|125619243, gi... - gi\|254851255\|ref\|ZP_05240605.1\| ComF family protein [Vibrio cholerae MO10], gi\|254846960\|gb\|EET25374... gi\|229507233, gi... - gi\|229507233\|ref\|ZP_04396738.1\| hypothetical protein VCF_002456 [Vibrio cholerae BX 330286], gi\|2293... gi\|229346030, gi... - gi\|229516967\|ref\|ZP_04406413.1\| hypothetical protein VCC_000988 [Vibrio cholerae RC9], gi\|229346030\|... gi\|146317473, gi... - gi\|227119155\|ref\|YP_002821051.1\| ComF-related protein [Vibrio cholerae O395], gi\|227014605\|gb\|ACP108... gi\|227082833, gi... - gi\|227082833\|ref\|YP_002811384.1\| ComF-related protein [Vibrio cholerae M66-2], gi\|227010721\|gb\|ACP06... gi\|229369394, gi... - gi\|229606739\|ref\|YP_002877387.1\| hypothetical protein VCD_001648 [Vibrio cholerae MJ-1236], gi\|22936... gi\|9657316, gi\|1... - gi\|9657316\|gb\|AAF95859.1\| ComF-related protein [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15... gi\|11354477 - pir\|\|H82042 ComF-related protein VC2719 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|124119958, gi... - gi\|153221047\|ref\|ZP_01952102.1\| ComF family protein [Vibrio cholerae MAK 757], gi\|124119958\|gb\|EAY38... gi\|121726721, gi... - gi\|121726721\|ref\|ZP_01679946.1\| ComF family protein [Vibrio cholerae V52], gi\|121630882\|gb\|EAX63264....	157.0	[0..3]	[238..56]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVRALLDIL FPPLCHLCRA PIPGAEKLHL CPACLARAKP IGSPLCTVCG VPFATEGGID  60
   61 HRCGDCIVSP PPYEGARAAY LFEGPVQELV HRFKYGHKAH LRRPLALLAA ERLSSFVAES 120
  121 ASDLIIPVPL HRSRLRERGF NQAILMGELL ARRWRIPLHR ATLGRVRATA PQVGLTSAQR 180
  181 RENIRGAFAV PSPAAVAGRR VLLLDDVFTT GSTIAECALV LRKAGAAAVH AATVARTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1ecbA
Description:	Glutamine PRPP amidotransferase, C-terminal domain; Glutamine PRPP amidotransferase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.13215401486422	bayes_pls_golite062009
transferase activity	2.01480567121657	bayes_pls_golite062009
diphosphotransferase activity	1.2980439591794	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	0.899227917236164	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.782718700399924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: